CircRNA Information

General Information
circRNA Basic Information
CircID chr1:175159562|175159726
Strand -
CircType exon
Host Gene ENSG00000235750.8;
Algorism CIRI2;
Sequence TCTGTTACCTCTGCATCCCACCTGTGCCATACCGTGCACACATCACAACCTTATGACATCACTTCCAGTGTTGCCTTCTGTGAGACTGCACTGATGATTGTCTAGTTCCTTCCCTGCTGGAAACTTTGGTTATATAGGAGATACCTAGCTCAGGTGTAGCATCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:175159562|175159726 hsa-miR-148a-5p 0 0 1
chr1:175159562|175159726 hsa-miR-148a-3p 0 0 1
chr1:175159562|175159726 hsa-miR-183-5p 0 0 1
chr1:175159562|175159726 hsa-miR-183-3p 0 0 1
chr1:175159562|175159726 hsa-miR-214-5p 0 0 1
chr1:175159562|175159726 hsa-miR-214-3p 0 0 1
chr1:175159562|175159726 hsa-miR-221-5p 0 0 1
chr1:175159562|175159726 hsa-miR-221-3p 0 0 1
chr1:175159562|175159726 hsa-miR-222-5p 0 0 1
chr1:175159562|175159726 hsa-miR-222-3p 0 0 1
chr1:175159562|175159726 hsa-miR-141-5p 0 0 1
chr1:175159562|175159726 hsa-miR-141-3p 0 0 1
chr1:175159562|175159726 hsa-miR-152-5p 0 0 1
chr1:175159562|175159726 hsa-miR-152-3p 0 0 1
chr1:175159562|175159726 hsa-miR-200a-5p 0 0 1
chr1:175159562|175159726 hsa-miR-200a-3p 0 0 1
chr1:175159562|175159726 hsa-miR-148b-5p 0 0 1
chr1:175159562|175159726 hsa-miR-148b-3p 0 0 1
chr1:175159562|175159726 hsa-miR-410-5p 0 0 1
chr1:175159562|175159726 hsa-miR-410-3p 0 0 1
chr1:175159562|175159726 hsa-miR-552-5p 0 0 1
chr1:175159562|175159726 hsa-miR-552-3p 0 0 1
chr1:175159562|175159726 hsa-miR-561-5p 0 0 1
chr1:175159562|175159726 hsa-miR-561-3p 0 0 1
chr1:175159562|175159726 hsa-miR-610 0 0 1
chr1:175159562|175159726 hsa-miR-1252-5p 0 0 1
chr1:175159562|175159726 hsa-miR-1252-3p 0 0 1
chr1:175159562|175159726 hsa-miR-331-5p 0 0 1
chr1:175159562|175159726 hsa-miR-338-3p 0 0 1
chr1:175159562|175159726 hsa-miR-337-3p 0 0 1
chr1:175159562|175159726 hsa-miR-342-3p 0 0 1
chr1:175159562|175159726 hsa-miR-194 0 0 1
chr1:175159562|175159726 hsa-miR-564 1 0 0
chr1:175159562|175159726 hsa-miR-648 1 0 0
chr1:175159562|175159726 hsa-miR-1183 1 0 0
chr1:175159562|175159726 hsa-miR-4298 1 0 0
chr1:175159562|175159726 hsa-miR-4257 1 0 0
chr1:175159562|175159726 hsa-miR-3665 1 0 0
chr1:175159562|175159726 hsa-miR-3945 1 0 0
chr1:175159562|175159726 hsa-miR-4530 1 0 0
chr1:175159562|175159726 hsa-miR-4651 1 0 0
chr1:175159562|175159726 hsa-miR-4706 1 0 0
chr1:175159562|175159726 hsa-miR-7150 1 0 0
chr1:175159562|175159726 hsa-miR-12114 1 0 0
chr1:175159562|175159726 hsa-miR-150-3p 1 0 0
chr1:175159562|175159726 hsa-miR-3622a-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6873-5p 1 0 0
chr1:175159562|175159726 hsa-miR-4722-5p 1 0 0
chr1:175159562|175159726 hsa-miR-5589-5p 1 0 0
chr1:175159562|175159726 hsa-miR-3151-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6796-5p 1 0 0
chr1:175159562|175159726 hsa-miR-3130-3p 1 0 0
chr1:175159562|175159726 hsa-miR-6782-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6786-5p 1 0 0
chr1:175159562|175159726 hsa-miR-92b-5p 1 0 0
chr1:175159562|175159726 hsa-miR-149-3p 1 0 0
chr1:175159562|175159726 hsa-miR-6830-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6802-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6886-5p 1 0 0
chr1:175159562|175159726 hsa-miR-7112-5p 1 0 0
chr1:175159562|175159726 hsa-miR-654-5p 1 0 0
chr1:175159562|175159726 hsa-miR-500a-3p 1 0 0
chr1:175159562|175159726 hsa-miR-4763-3p 1 0 0
chr1:175159562|175159726 hsa-miR-6769b-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6865-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6756-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6769a-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6815-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6851-5p 1 0 0
chr1:175159562|175159726 hsa-miR-10401-5p 1 0 0
chr1:175159562|175159726 hsa-miR-6722-3p 1 0 0
chr1:175159562|175159726 hsa-miR-6797-5p 1 0 0
chr1:175159562|175159726 hsa-miR-4728-5p 1 0 0
chr1:175159562|175159726 hsa-miR-5196-5p 1 0 0
chr1:175159562|175159726 hsa-miR-4725-3p 1 0 0
chr1:175159562|175159726 hsa-miR-6766-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:175159562|175159726
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MCHTVHTSQPYDITSSVAFCETALMIV
Nucleotide Sequence CTGTGCCATACCGTGCACACATCACAACCTTATGACATCACTTCCAGTGTTGCCTTCTGTGAGACTGCACTGATGATTGTCTAG
CircID chr1:175159562|175159726
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence LLPLHPTCAIPCTHHNLMTSLPVLPSVRLH
Nucleotide Sequence CTGTTACCTCTGCATCCCACCTGTGCCATACCGTGCACACATCACAACCTTATGACATCACTTCCAGTGTTGCCTTCTGTGAGACTGCACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab