CircRNA Information

General Information
circRNA Basic Information
CircID chr1:1756258|1756608
Strand -
CircType exon
Host Gene ENSG00000008130.14;
Algorism CIRI2;
Sequence CTGGAAAAGCGAGGAAGCGTACAGCAGCGTCCCGTCTCCCCCCAGGCAGATGATGAAGTCTATCTGATTGGAAATGTCATCATAATCTAGGAAACACAAAGCAAAACCAAGAAGAGGCTGTCACACAGTGGCCCCTCTGTGGCGCAGTGCGCAGACACCAATGACAAGGGCAACAGTGCCAGAAGCTTCCAATGGGGCGGGGAACTGTGCTGGAGAAACCAAGGACAGAGCTGCTGACAGCCCACCTTCTCGAAAGGTACAGAATTTCTTCTTCACTGCCCCAAAGCTTTCATCGCTGGCGATGGCAGGGTCTTCTAGCACTTTCTTTTCCACATACACGATCATGTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:1756258|1756608 hsa-miR-17-5p 0 0 1
chr1:1756258|1756608 hsa-miR-17-3p 0 0 1
chr1:1756258|1756608 hsa-miR-20a-5p 0 0 1
chr1:1756258|1756608 hsa-miR-20a-3p 0 0 1
chr1:1756258|1756608 hsa-miR-93-5p 0 0 1
chr1:1756258|1756608 hsa-miR-93-3p 0 0 1
chr1:1756258|1756608 hsa-miR-106a-5p 0 0 1
chr1:1756258|1756608 hsa-miR-106a-3p 0 0 1
chr1:1756258|1756608 hsa-miR-34a-5p 0 0 1
chr1:1756258|1756608 hsa-miR-34a-3p 0 0 1
chr1:1756258|1756608 hsa-miR-214-5p 0 0 1
chr1:1756258|1756608 hsa-miR-214-3p 0 0 1
chr1:1756258|1756608 hsa-miR-106b-5p 0 0 1
chr1:1756258|1756608 hsa-miR-106b-3p 0 0 1
chr1:1756258|1756608 hsa-miR-302a-5p 0 0 1
chr1:1756258|1756608 hsa-miR-302a-3p 0 0 1
chr1:1756258|1756608 hsa-miR-302b-5p 0 0 1
chr1:1756258|1756608 hsa-miR-302b-3p 0 0 1
chr1:1756258|1756608 hsa-miR-302c-5p 0 0 1
chr1:1756258|1756608 hsa-miR-302c-3p 0 0 1
chr1:1756258|1756608 hsa-miR-302d-5p 0 0 1
chr1:1756258|1756608 hsa-miR-302d-3p 0 0 1
chr1:1756258|1756608 hsa-miR-372-5p 0 0 1
chr1:1756258|1756608 hsa-miR-372-3p 0 0 1
chr1:1756258|1756608 hsa-miR-373-5p 0 0 1
chr1:1756258|1756608 hsa-miR-373-3p 0 0 1
chr1:1756258|1756608 hsa-miR-346 0 0 1
chr1:1756258|1756608 hsa-miR-384 0 0 1
chr1:1756258|1756608 hsa-miR-20b-5p 0 0 1
chr1:1756258|1756608 hsa-miR-20b-3p 0 0 1
chr1:1756258|1756608 hsa-miR-449a 0 0 1
chr1:1756258|1756608 hsa-miR-520e-5p 0 0 1
chr1:1756258|1756608 hsa-miR-520e-3p 0 0 1
chr1:1756258|1756608 hsa-miR-520b-5p 0 0 1
chr1:1756258|1756608 hsa-miR-520b-3p 0 0 1
chr1:1756258|1756608 hsa-miR-519d-5p 0 0 1
chr1:1756258|1756608 hsa-miR-519d-3p 0 0 1
chr1:1756258|1756608 hsa-miR-504-5p 0 0 1
chr1:1756258|1756608 hsa-miR-504-3p 0 0 1
chr1:1756258|1756608 hsa-miR-567 0 0 1
chr1:1756258|1756608 hsa-miR-599 0 0 1
chr1:1756258|1756608 hsa-miR-616-5p 0 0 1
chr1:1756258|1756608 hsa-miR-616-3p 0 0 1
chr1:1756258|1756608 hsa-miR-632 0 1 1
chr1:1756258|1756608 hsa-miR-637 1 1 1
chr1:1756258|1756608 hsa-miR-646 0 0 1
chr1:1756258|1756608 hsa-miR-661 0 0 1
chr1:1756258|1756608 hsa-miR-449b-5p 0 0 1
chr1:1756258|1756608 hsa-miR-449b-3p 0 0 1
chr1:1756258|1756608 hsa-miR-766-5p 0 0 1
chr1:1756258|1756608 hsa-miR-766-3p 0 0 1
chr1:1756258|1756608 hsa-miR-892a 0 0 1
chr1:1756258|1756608 hsa-miR-874-5p 0 0 1
chr1:1756258|1756608 hsa-miR-874-3p 0 0 1
chr1:1756258|1756608 hsa-miR-541-5p 0 0 1
chr1:1756258|1756608 hsa-miR-541-3p 0 0 1
chr1:1756258|1756608 hsa-miR-922 0 0 1
chr1:1756258|1756608 hsa-miR-938 0 0 1
chr1:1756258|1756608 hsa-miR-297 0 0 1
chr1:1756258|1756608 hsa-miR-1238-5p 0 0 1
chr1:1756258|1756608 hsa-miR-1238-3p 0 0 1
chr1:1756258|1756608 hsa-miR-1208 0 0 1
chr1:1756258|1756608 hsa-miR-1272 0 0 1
chr1:1756258|1756608 hsa-miR-302e 0 0 1
chr1:1756258|1756608 hsa-miR-1322 0 0 1
chr1:1756258|1756608 hsa-miR-671-5p 0 0 1
chr1:1756258|1756608 hsa-miR-486-3p 0 0 1
chr1:1756258|1756608 hsa-miR-299-3p 0 0 1
chr1:1756258|1756608 hsa-miR-423-5p 0 0 1
chr1:1756258|1756608 hsa-miR-654-5p 0 1 1
chr1:1756258|1756608 hsa-miR-483-5p 0 0 1
chr1:1756258|1756608 hsa-miR-338-3p 0 0 1
chr1:1756258|1756608 hsa-miR-520d-3p 0 0 1
chr1:1756258|1756608 hsa-miR-34c-5p 0 0 1
chr1:1756258|1756608 hsa-miR-520a-3p 0 0 1
chr1:1756258|1756608 hsa-miR-520c-3p 0 0 1
chr1:1756258|1756608 hsa-miR-515-5p 0 0 1
chr1:1756258|1756608 hsa-miR-542-3p 0 0 1
chr1:1756258|1756608 hsa-miR-516a-3p 0 0 1
chr1:1756258|1756608 hsa-miR-1254 0 0 1
chr1:1756258|1756608 hsa-miR-147a 1 0 0
chr1:1756258|1756608 hsa-miR-581 0 1 0
chr1:1756258|1756608 hsa-miR-630 1 0 0
chr1:1756258|1756608 hsa-miR-1202 1 0 0
chr1:1756258|1756608 hsa-miR-3132 1 0 0
chr1:1756258|1756608 hsa-miR-3175 0 1 0
chr1:1756258|1756608 hsa-miR-4298 1 0 0
chr1:1756258|1756608 hsa-miR-4260 0 1 0
chr1:1756258|1756608 hsa-miR-4252 0 1 0
chr1:1756258|1756608 hsa-miR-4265 1 0 0
chr1:1756258|1756608 hsa-miR-3611 0 1 0
chr1:1756258|1756608 hsa-miR-3911 1 0 0
chr1:1756258|1756608 hsa-miR-4491 1 0 0
chr1:1756258|1756608 hsa-miR-4493 0 1 0
chr1:1756258|1756608 hsa-miR-4656 1 0 0
chr1:1756258|1756608 hsa-miR-4657 1 0 0
chr1:1756258|1756608 hsa-miR-4660 0 1 0
chr1:1756258|1756608 hsa-miR-4688 1 0 0
chr1:1756258|1756608 hsa-miR-4706 1 0 0
chr1:1756258|1756608 hsa-miR-4741 1 1 0
chr1:1756258|1756608 hsa-miR-4752 1 0 0
chr1:1756258|1756608 hsa-miR-5698 1 0 0
chr1:1756258|1756608 hsa-miR-5703 1 0 0
chr1:1756258|1756608 hsa-miR-6079 0 1 0
chr1:1756258|1756608 hsa-miR-6124 1 1 0
chr1:1756258|1756608 hsa-miR-6745 1 0 0
chr1:1756258|1756608 hsa-miR-7974 1 0 0
chr1:1756258|1756608 hsa-miR-8061 0 1 0
chr1:1756258|1756608 hsa-miR-8089 1 0 0
chr1:1756258|1756608 hsa-miR-4665-3p 1 0 0
chr1:1756258|1756608 hsa-miR-6765-5p 1 0 0
chr1:1756258|1756608 hsa-miR-6825-5p 0 1 0
chr1:1756258|1756608 hsa-miR-139-3p 1 1 0
chr1:1756258|1756608 hsa-miR-6833-5p 1 1 0
chr1:1756258|1756608 hsa-miR-6867-5p 1 1 0
chr1:1756258|1756608 hsa-miR-4709-3p 0 1 0
chr1:1756258|1756608 hsa-miR-6727-5p 1 0 0
chr1:1756258|1756608 hsa-miR-4677-5p 0 1 0
chr1:1756258|1756608 hsa-miR-6748-5p 1 0 0
chr1:1756258|1756608 hsa-miR-4725-5p 0 1 0
chr1:1756258|1756608 hsa-miR-3190-3p 1 0 0
chr1:1756258|1756608 hsa-miR-7109-5p 1 1 0
chr1:1756258|1756608 hsa-miR-1226-5p 1 0 0
chr1:1756258|1756608 hsa-miR-4707-3p 1 0 0
chr1:1756258|1756608 hsa-miR-92b-5p 1 1 0
chr1:1756258|1756608 hsa-miR-149-3p 1 0 0
chr1:1756258|1756608 hsa-miR-574-5p 1 0 0
chr1:1756258|1756608 hsa-miR-6743-3p 1 0 0
chr1:1756258|1756608 hsa-miR-584-3p 0 1 0
chr1:1756258|1756608 hsa-miR-3617-3p 0 1 0
chr1:1756258|1756608 hsa-miR-6812-5p 1 0 0
chr1:1756258|1756608 hsa-miR-6816-5p 1 0 0
chr1:1756258|1756608 hsa-miR-6870-5p 1 1 0
chr1:1756258|1756608 hsa-miR-6775-5p 0 1 0
chr1:1756258|1756608 hsa-miR-5001-5p 1 0 0
chr1:1756258|1756608 hsa-miR-6743-5p 1 0 0
chr1:1756258|1756608 hsa-miR-6756-5p 1 0 0
chr1:1756258|1756608 hsa-miR-6803-5p 1 0 0
chr1:1756258|1756608 hsa-miR-7107-5p 1 0 0
chr1:1756258|1756608 hsa-miR-6751-5p 1 0 0
chr1:1756258|1756608 hsa-miR-7111-5p 1 1 0
chr1:1756258|1756608 hsa-miR-328-5p 1 0 0
chr1:1756258|1756608 hsa-miR-6795-5p 1 1 0
chr1:1756258|1756608 hsa-miR-6887-5p 1 1 0
chr1:1756258|1756608 hsa-miR-3940-5p 1 0 0
chr1:1756258|1756608 hsa-miR-3184-5p 0 1 0
chr1:1756258|1756608 hsa-miR-6762-5p 1 1 0
chr1:1756258|1756608 hsa-miR-6727-3p 0 1 0
chr1:1756258|1756608 hsa-miR-6775-3p 1 0 0
chr1:1756258|1756608 hsa-miR-6817-5p 0 1 0
chr1:1756258|1756608 hsa-miR-4676-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:1756258|1756608
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence LEKRGSVQQRPVSPQADDEVYLIGNVIII
Nucleotide Sequence CTGGAAAAGCGAGGAAGCGTACAGCAGCGTCCCGTCTCCCCCCAGGCAGATGATGAAGTCTATCTGATTGGAAATGTCATCATAATCTAG
CircID chr1:1756258|1756608
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MSHSGPSVAQCADTNDKGNSARSFQWGGELCWRNQGQSC
Nucleotide Sequence CTGTCACACAGTGGCCCCTCTGTGGCGCAGTGCGCAGACACCAATGACAAGGGCAACAGTGCCAGAAGCTTCCAATGGGGCGGGGAACTGTGCTGGAGAAACCAAGGACAGAGCTGCTGA
CircID chr1:1756258|1756608
ORF Type ORF3
Protein Length 71
Nucleotide Length 213
Protein Sequence MWRSAQTPMTRATVPEASNGAGNCAGETKDRAADSPPSRKVQNFFFTAPKLSSLAMAGSSSTFFSTYTIMF
Nucleotide Sequence CTGTGGCGCAGTGCGCAGACACCAATGACAAGGGCAACAGTGCCAGAAGCTTCCAATGGGGCGGGGAACTGTGCTGGAGAAACCAAGGACAGAGCTGCTGACAGCCCACCTTCTCGAAAGGTACAGAATTTCTTCTTCACTGCCCCAAAGCTTTCATCGCTGGCGATGGCAGGGTCTTCTAGCACTTTCTTTTCCACATACACGATCATGTTC
CircID chr1:1756258|1756608
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MGRGTVLEKPRTELLTAHLLERYRISSSLPQSFHRWRWQGLLALSFPHTRSCS
Nucleotide Sequence ATGGGGCGGGGAACTGTGCTGGAGAAACCAAGGACAGAGCTGCTGACAGCCCACCTTCTCGAAAGGTACAGAATTTCTTCTTCACTGCCCCAAAGCTTTCATCGCTGGCGATGGCAGGGTCTTCTAGCACTTTCTTTTCCACATACACGATCATGTTCT
CircID chr1:1756258|1756608
ORF Type ORF5
Protein Length 74
Nucleotide Length 225
Protein Sequence MIVYVEKKVLEDPAIASDESFGAVKKKFCTFREGGLSAALSLVSPAQFPAPLEASGTVALVIGVCALRHRGATV
Nucleotide Sequence ATGATCGTGTATGTGGAAAAGAAAGTGCTAGAAGACCCTGCCATCGCCAGCGATGAAAGCTTTGGGGCAGTGAAGAAGAAATTCTGTACCTTTCGAGAAGGTGGGCTGTCAGCAGCTCTGTCCTTGGTTTCTCCAGCACAGTTCCCCGCCCCATTGGAAGCTTCTGGCACTGTTGCCCTTGTCATTGGTGTCTGCGCACTGCGCCACAGAGGGGCCACTGTGTGA
CircID chr1:1756258|1756608
ORF Type ORF6
Protein Length 33
Nucleotide Length 99
Protein Sequence MCFLDYDDISNQIDFIICLGGDGTLLYASSLFQ
Nucleotide Sequence TTGTGTTTCCTAGATTATGATGACATTTCCAATCAGATAGACTTCATCATCTGCCTGGGGGGAGACGGGACGCTGCTGTACGCTTCCTCGCTTTTCCAG
CircID chr1:1756258|1756608
ORF Type ORF7
Protein Length 31
Nucleotide Length 96
Protein Sequence MALLPLSLVSAHCATEGPLCDSLFLVLLCVS
Nucleotide Sequence CTGGCACTGTTGCCCTTGTCATTGGTGTCTGCGCACTGCGCCACAGAGGGGCCACTGTGTGACAGCCTCTTCTTGGTTTTGCTTTGTGTTTCCTAG
CircID chr1:1756258|1756608
ORF Type ORF8
Protein Length 60
Nucleotide Length 183
Protein Sequence MYLSRRWAVSSSVLGFSSTVPRPIGSFWHCCPCHWCLRTAPQRGHCVTASSWFCFVFPRL
Nucleotide Sequence CTGTACCTTTCGAGAAGGTGGGCTGTCAGCAGCTCTGTCCTTGGTTTCTCCAGCACAGTTCCCCGCCCCATTGGAAGCTTCTGGCACTGTTGCCCTTGTCATTGGTGTCTGCGCACTGCGCCACAGAGGGGCCACTGTGTGACAGCCTCTTCTTGGTTTTGCTTTGTGTTTCCTAGATTATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab