CircRNA Information

General Information
circRNA Basic Information
CircID chr1:17580553|17588479
Strand +
CircType exon
Host Gene ENSG00000074964.16;
Algorism find_circ;CIRI2;DCC;
Sequence GTGTGTAGCTGGGACGGTGCTGGTCTGAGCTGGACCTTGTCTGATGGCTTCCTCCAACCCTCCTCCACAGCCTGCCATAGCCATGCCCACCTACCCCAGCCATCTCTCCATTGACCAAACCTCGGAGATCCTGCAGCCTGGCCAACTCCTTCTCTCTTCCAGGAGATCAGCTGGTTCCAGGAGTCCCAGGCCCCTCCTCTGAGGCAGAGGACGACCCAGGAGAGGCGTTTGAGTTTGATGACAGTGATGATGAAGAGGACACCAGCGCAGCCCTGGGCGTCCCCAGCCTTGCTCCTGAGAGGGACACAGACCCCCCACTGATCCACTTGGACTCCATCCCTGTCACTGACCCAGACCCAGCAGCTGCTCCACCCGGCACAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:17580553|17588479 hsa-miR-135b-5p 0 0 1
chr1:17580553|17588479 hsa-miR-135b-3p 0 0 1
chr1:17580553|17588479 hsa-miR-492 0 0 1
chr1:17580553|17588479 hsa-miR-551a 0 0 1
chr1:17580553|17588479 hsa-miR-558 0 0 1
chr1:17580553|17588479 hsa-miR-551b-5p 0 0 1
chr1:17580553|17588479 hsa-miR-551b-3p 0 0 1
chr1:17580553|17588479 hsa-miR-585-5p 0 0 1
chr1:17580553|17588479 hsa-miR-585-3p 0 0 1
chr1:17580553|17588479 hsa-miR-596 1 0 1
chr1:17580553|17588479 hsa-miR-632 0 0 1
chr1:17580553|17588479 hsa-miR-640 0 0 1
chr1:17580553|17588479 hsa-miR-646 0 0 1
chr1:17580553|17588479 hsa-miR-668-5p 0 0 1
chr1:17580553|17588479 hsa-miR-668-3p 0 0 1
chr1:17580553|17588479 hsa-miR-890 0 0 1
chr1:17580553|17588479 hsa-miR-665 0 0 1
chr1:17580553|17588479 hsa-miR-1226-5p 0 0 1
chr1:17580553|17588479 hsa-miR-1226-3p 0 0 1
chr1:17580553|17588479 hsa-miR-1231 0 0 1
chr1:17580553|17588479 hsa-miR-1200 0 0 1
chr1:17580553|17588479 hsa-miR-1250-5p 0 0 1
chr1:17580553|17588479 hsa-miR-1250-3p 0 0 1
chr1:17580553|17588479 hsa-miR-1272 0 0 1
chr1:17580553|17588479 hsa-miR-1197 0 0 1
chr1:17580553|17588479 hsa-miR-1827 0 0 1
chr1:17580553|17588479 hsa-miR-138-5p 0 1 1
chr1:17580553|17588479 hsa-miR-191-3p 0 1 1
chr1:17580553|17588479 hsa-miR-941 0 0 1
chr1:17580553|17588479 hsa-miR-339-5p 0 0 1
chr1:17580553|17588479 hsa-miR-1289 0 0 1
chr1:17580553|17588479 hsa-miR-1207-3p 0 0 1
chr1:17580553|17588479 hsa-miR-516a-3p 0 0 1
chr1:17580553|17588479 hsa-miR-1274a 0 0 1
chr1:17580553|17588479 hsa-miR-1274b 0 0 1
chr1:17580553|17588479 hsa-miR-1269 0 0 1
chr1:17580553|17588479 hsa-miR-138 0 0 1
chr1:17580553|17588479 hsa-miR-1268 0 0 1
chr1:17580553|17588479 hsa-miR-135a 0 0 1
chr1:17580553|17588479 hsa-miR-326 1 0 0
chr1:17580553|17588479 hsa-miR-612 1 0 0
chr1:17580553|17588479 hsa-miR-762 1 0 0
chr1:17580553|17588479 hsa-miR-4312 1 0 0
chr1:17580553|17588479 hsa-miR-3909 1 0 0
chr1:17580553|17588479 hsa-miR-3943 1 0 0
chr1:17580553|17588479 hsa-miR-4425 1 0 0
chr1:17580553|17588479 hsa-miR-3135b 1 0 0
chr1:17580553|17588479 hsa-miR-4507 1 0 0
chr1:17580553|17588479 hsa-miR-4515 1 0 0
chr1:17580553|17588479 hsa-miR-1587 1 0 0
chr1:17580553|17588479 hsa-miR-4538 1 0 0
chr1:17580553|17588479 hsa-miR-5787 1 0 0
chr1:17580553|17588479 hsa-miR-7974 1 0 0
chr1:17580553|17588479 hsa-miR-128-1-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6765-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6825-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6720-5p 1 0 0
chr1:17580553|17588479 hsa-miR-766-3p 1 0 0
chr1:17580553|17588479 hsa-miR-3692-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6744-5p 1 0 0
chr1:17580553|17588479 hsa-miR-4474-3p 1 0 0
chr1:17580553|17588479 hsa-miR-3622b-5p 1 0 0
chr1:17580553|17588479 hsa-miR-3180-3p 1 0 0
chr1:17580553|17588479 hsa-miR-6748-5p 1 0 0
chr1:17580553|17588479 hsa-miR-185-3p 1 0 0
chr1:17580553|17588479 hsa-miR-4697-3p 1 0 0
chr1:17580553|17588479 hsa-miR-3194-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6810-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6882-3p 1 0 0
chr1:17580553|17588479 hsa-miR-4763-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6763-3p 1 0 0
chr1:17580553|17588479 hsa-miR-1908-5p 1 0 0
chr1:17580553|17588479 hsa-miR-3614-5p 1 0 0
chr1:17580553|17588479 hsa-miR-4638-3p 1 0 0
chr1:17580553|17588479 hsa-miR-5196-3p 1 0 0
chr1:17580553|17588479 hsa-miR-149-3p 1 0 0
chr1:17580553|17588479 hsa-miR-6824-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6800-5p 1 0 0
chr1:17580553|17588479 hsa-miR-4640-3p 1 0 0
chr1:17580553|17588479 hsa-miR-6825-3p 1 0 0
chr1:17580553|17588479 hsa-miR-4687-5p 1 0 0
chr1:17580553|17588479 hsa-miR-3180-5p 1 0 0
chr1:17580553|17588479 hsa-miR-1180-5p 1 0 0
chr1:17580553|17588479 hsa-miR-4750-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6857-3p 1 0 0
chr1:17580553|17588479 hsa-miR-4750-3p 1 0 0
chr1:17580553|17588479 hsa-miR-6798-3p 1 0 0
chr1:17580553|17588479 hsa-miR-6732-3p 1 0 0
chr1:17580553|17588479 hsa-miR-6816-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6779-5p 1 0 0
chr1:17580553|17588479 hsa-miR-3127-3p 1 0 0
chr1:17580553|17588479 hsa-miR-3620-5p 1 0 0
chr1:17580553|17588479 hsa-miR-449c-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6883-5p 1 0 0
chr1:17580553|17588479 hsa-miR-9851-5p 1 0 0
chr1:17580553|17588479 hsa-miR-6792-3p 1 0 0
chr1:17580553|17588479 hsa-miR-6829-3p 1 0 0
chr1:17580553|17588479 hsa-miR-10400-3p 1 0 0
chr1:17580553|17588479 hsa-miR-6775-3p 1 0 0
chr1:17580553|17588479 hsa-miR-7114-3p 1 0 0
chr1:17580553|17588479 hsa-miR-6817-5p 1 0 0
chr1:17580553|17588479 hsa-miR-1234-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:17580553|17588479
ORF Type ORF1
Protein Length 56
Nucleotide Length 171
Protein Sequence MESKWISGGSVSLSGARLGTPRAALVSSSSSLSSNSNASPGSSSASEEGPGTPGTS
Nucleotide Sequence ATGGAGTCCAAGTGGATCAGTGGGGGGTCTGTGTCCCTCTCAGGAGCAAGGCTGGGGACGCCCAGGGCTGCGCTGGTGTCCTCTTCATCATCACTGTCATCAAACTCAAACGCCTCTCCTGGGTCGTCCTCTGCCTCAGAGGAGGGGCCTGGGACTCCTGGAACCAGCTGA
CircID chr1:17580553|17588479
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MAGCGGGLEEAIRQGPAQTSTVPATH
Nucleotide Sequence ATGGCAGGCTGTGGAGGAGGGTTGGAGGAAGCCATCAGACAAGGTCCAGCTCAGACCAGCACCGTCCCAGCTACACAC
CircID chr1:17580553|17588479
ORF Type ORF3
Protein Length 75
Nucleotide Length 225
Protein Sequence MCPSQEQGWGRPGLRWCPLHHHCHQTQTPLLGRPLPQRRGLGLLEPADLLWQAVEEGWRKPSDKVQLRPAPSQLH
Nucleotide Sequence CTGTGTCCCTCTCAGGAGCAAGGCTGGGGACGCCCAGGGCTGCGCTGGTGTCCTCTTCATCATCACTGTCATCAAACTCAAACGCCTCTCCTGGGTCGTCCTCTGCCTCAGAGGAGGGGCCTGGGACTCCTGGAACCAGCTGATCTCCTATGGCAGGCTGTGGAGGAGGGTTGGAGGAAGCCATCAGACAAGGTCCAGCTCAGACCAGCACCGTCCCAGCTACAC
CircID chr1:17580553|17588479
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MISYGRLWRRVGGSHQTRSSSDQHRPSYT
Nucleotide Sequence CTGATCTCCTATGGCAGGCTGTGGAGGAGGGTTGGAGGAAGCCATCAGACAAGGTCCAGCTCAGACCAGCACCGTCCCAGCTACACA
CircID chr1:17580553|17588479
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MSWTLSDGFLQPSSTACHRRSAGSRSPRPLL
Nucleotide Sequence CTGAGCTGGACCTTGTCTGATGGCTTCCTCCAACCCTCCTCCACAGCCTGCCATAGGAGATCAGCTGGTTCCAGGAGTCCCAGGCCCCTCCTCTGA
CircID chr1:17580553|17588479
ORF Type ORF6
Protein Length 86
Nucleotide Length 258
Protein Sequence MMASSNPPPQPAIGDQLVPGVPGPSSEAEDDPGEAFEFDDSDDEEDTSAALGVPSLAPERDTDPPLIHLDSIPVTDPDPAAAPPGT
Nucleotide Sequence CTGATGGCTTCCTCCAACCCTCCTCCACAGCCTGCCATAGGAGATCAGCTGGTTCCAGGAGTCCCAGGCCCCTCCTCTGAGGCAGAGGACGACCCAGGAGAGGCGTTTGAGTTTGATGACAGTGATGATGAAGAGGACACCAGCGCAGCCCTGGGCGTCCCCAGCCTTGCTCCTGAGAGGGACACAGACCCCCCACTGATCCACTTGGACTCCATCCCTGTCACTGACCCAGACCCAGCAGCTGCTCCACCCGGCACA
CircID chr1:17580553|17588479
ORF Type ORF7
Protein Length 40
Nucleotide Length 123
Protein Sequence MRQRTTQERRLSLMTVMMKRTPAQPWASPALLLRGTQTPH
Nucleotide Sequence CTGAGGCAGAGGACGACCCAGGAGAGGCGTTTGAGTTTGATGACAGTGATGATGAAGAGGACACCAGCGCAGCCCTGGGCGTCCCCAGCCTTGCTCCTGAGAGGGACACAGACCCCCCACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:17580553|17588479 U2AF2 4 0 2
chr1:17580553|17588479 MOV10 0 0 1
chr1:17580553|17588479 FUS 1 0 0
chr1:17580553|17588479 SF3B4 2 0 0
chr1:17580553|17588479 FAM120A 0 1 0
chr1:17580553|17588479 PRPF8 2 2 0
chr1:17580553|17588479 FMR1 0 0 1
chr1:17580553|17588479 DGCR8 0 1 0
chr1:17580553|17588479 SRSF7 0 1 3
chr1:17580553|17588479 SRSF1 0 0 3
chr1:17580553|17588479 U2AF1 2 0 2
chr1:17580553|17588479 NOP56 0 1 0
chr1:17580553|17588479 SRSF9 0 0 3
chr1:17580553|17588479 DDX54 0 0 8
chr1:17580553|17588479 SF3A3 2 0 1
chr1:17580553|17588479 TRA2A 0 0 1
chr1:17580553|17588479 LARP7 2 0 0
chr1:17580553|17588479 SMNDC1 2 0 0
chr1:17580553|17588479 TARDBP 0 4 0
chr1:17580553|17588479 BUD13 0 0 1
chr1:17580553|17588479 CSTF2T 0 0 2
chr1:17580553|17588479 TIA1 0 3 0
chr1:17580553|17588479 EIF4A3 1 1 7
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab