CircRNA Information

General Information
circRNA Basic Information
CircID chr1:1785379|1785639
Strand -
CircType exon
Host Gene ENSG00000078369.16;
Algorism CIRI2;
Sequence TTTAAAATTAAATACAAAAGGTGGAAAGGGGTAAGGGTGCAGAGAGCTCTACAGAGTTGTTGGACGGAAAGAGAAAGAAGGGGTTTCATTTGTATTCTCTTTGCCAGATCCAGGCCTACCGCAAGGTCACAGCACAGTTTTGTATAGAATGTTGCAGAAAACAGGATGGAGAAGCCACTACTGCTGCTATGAAGGAGTGCGGGGGGCGGGGCGGGGGGTCCCACAGAACCTGCTTTCCAAACGCTGCTGCTGAACACTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:1785379|1785639 hsa-miR-15a-5p 0 0 1
chr1:1785379|1785639 hsa-miR-15a-3p 0 0 1
chr1:1785379|1785639 hsa-miR-205-5p 0 0 1
chr1:1785379|1785639 hsa-miR-205-3p 0 0 1
chr1:1785379|1785639 hsa-miR-214-5p 0 0 1
chr1:1785379|1785639 hsa-miR-214-3p 0 0 1
chr1:1785379|1785639 hsa-miR-15b-5p 0 0 1
chr1:1785379|1785639 hsa-miR-15b-3p 0 0 1
chr1:1785379|1785639 hsa-miR-136-5p 0 0 1
chr1:1785379|1785639 hsa-miR-136-3p 0 0 1
chr1:1785379|1785639 hsa-miR-195-5p 0 0 1
chr1:1785379|1785639 hsa-miR-195-3p 0 0 1
chr1:1785379|1785639 hsa-miR-381-5p 0 0 1
chr1:1785379|1785639 hsa-miR-381-3p 0 0 1
chr1:1785379|1785639 hsa-miR-424-5p 0 0 1
chr1:1785379|1785639 hsa-miR-424-3p 0 0 1
chr1:1785379|1785639 hsa-miR-376b-5p 0 0 1
chr1:1785379|1785639 hsa-miR-376b-3p 0 0 1
chr1:1785379|1785639 hsa-miR-497-5p 0 0 1
chr1:1785379|1785639 hsa-miR-497-3p 0 0 1
chr1:1785379|1785639 hsa-miR-503-5p 0 0 1
chr1:1785379|1785639 hsa-miR-503-3p 0 0 1
chr1:1785379|1785639 hsa-miR-646 0 0 1
chr1:1785379|1785639 hsa-miR-657 0 1 1
chr1:1785379|1785639 hsa-miR-1323 0 0 1
chr1:1785379|1785639 hsa-miR-300 0 0 1
chr1:1785379|1785639 hsa-miR-543 0 0 1
chr1:1785379|1785639 hsa-miR-922 0 0 1
chr1:1785379|1785639 hsa-miR-548e-5p 0 0 1
chr1:1785379|1785639 hsa-miR-548e-3p 0 0 1
chr1:1785379|1785639 hsa-miR-1248 0 0 1
chr1:1785379|1785639 hsa-miR-548g-5p 0 0 1
chr1:1785379|1785639 hsa-miR-548g-3p 0 0 1
chr1:1785379|1785639 hsa-miR-548o-3p 0 0 1
chr1:1785379|1785639 hsa-miR-1284 0 1 1
chr1:1785379|1785639 hsa-miR-548o 0 0 1
chr1:1785379|1785639 hsa-miR-199a-5p 0 1 1
chr1:1785379|1785639 hsa-miR-199b-5p 0 1 1
chr1:1785379|1785639 hsa-miR-199b-3p 0 0 1
chr1:1785379|1785639 hsa-miR-199a-3p 0 0 1
chr1:1785379|1785639 hsa-miR-483-3p 0 0 1
chr1:1785379|1785639 hsa-miR-515-5p 0 0 1
chr1:1785379|1785639 hsa-miR-548a-3p 0 0 1
chr1:1785379|1785639 hsa-miR-590-3p 0 0 1
chr1:1785379|1785639 hsa-miR-16 0 0 1
chr1:1785379|1785639 hsa-miR-548f 0 0 1
chr1:1785379|1785639 hsa-miR-544 0 0 1
chr1:1785379|1785639 hsa-miR-1254 0 0 1
chr1:1785379|1785639 hsa-miR-376a 0 0 1
chr1:1785379|1785639 hsa-miR-107 0 1 0
chr1:1785379|1785639 hsa-miR-326 1 0 0
chr1:1785379|1785639 hsa-miR-940 1 0 0
chr1:1785379|1785639 hsa-miR-1470 1 1 0
chr1:1785379|1785639 hsa-miR-1913 1 1 0
chr1:1785379|1785639 hsa-miR-4255 0 1 0
chr1:1785379|1785639 hsa-miR-3714 1 0 0
chr1:1785379|1785639 hsa-miR-3978 0 1 0
chr1:1785379|1785639 hsa-miR-7703 1 1 0
chr1:1785379|1785639 hsa-miR-134-3p 0 1 0
chr1:1785379|1785639 hsa-miR-152-5p 0 1 0
chr1:1785379|1785639 hsa-miR-4665-3p 1 0 0
chr1:1785379|1785639 hsa-miR-124-5p 1 1 0
chr1:1785379|1785639 hsa-miR-1225-3p 0 1 0
chr1:1785379|1785639 hsa-miR-1915-5p 1 0 0
chr1:1785379|1785639 hsa-miR-6832-3p 1 1 0
chr1:1785379|1785639 hsa-miR-4753-3p 0 1 0
chr1:1785379|1785639 hsa-miR-6763-3p 1 0 0
chr1:1785379|1785639 hsa-miR-7108-3p 1 1 0
chr1:1785379|1785639 hsa-miR-103a-3p 0 1 0
chr1:1785379|1785639 hsa-miR-6786-3p 1 0 0
chr1:1785379|1785639 hsa-miR-1237-3p 1 0 0
chr1:1785379|1785639 hsa-miR-6871-3p 1 0 0
chr1:1785379|1785639 hsa-miR-6741-3p 1 0 0
chr1:1785379|1785639 hsa-miR-6752-3p 1 1 0
chr1:1785379|1785639 hsa-miR-6865-3p 1 0 0
chr1:1785379|1785639 hsa-miR-5088-3p 0 1 0
chr1:1785379|1785639 hsa-miR-6795-3p 0 1 0
chr1:1785379|1785639 hsa-miR-6859-3p 0 1 0
chr1:1785379|1785639 hsa-miR-1292-3p 1 0 0
chr1:1785379|1785639 hsa-miR-6802-3p 1 0 0
chr1:1785379|1785639 hsa-miR-3620-3p 1 0 0
chr1:1785379|1785639 hsa-miR-4433a-5p 1 0 0
chr1:1785379|1785639 hsa-miR-6798-3p 1 0 0
chr1:1785379|1785639 hsa-miR-6846-3p 1 1 0
chr1:1785379|1785639 hsa-miR-1249-3p 1 0 0
chr1:1785379|1785639 hsa-miR-3200-3p 0 1 0
chr1:1785379|1785639 hsa-miR-3162-3p 1 0 0
chr1:1785379|1785639 hsa-miR-16-5p 0 1 0
chr1:1785379|1785639 hsa-miR-4764-3p 1 0 0
chr1:1785379|1785639 hsa-miR-3116 0 1 0
chr1:1785379|1785639 hsa-miR-6756-3p 1 0 0
chr1:1785379|1785639 hsa-miR-6784-3p 1 0 0
chr1:1785379|1785639 hsa-miR-10401-3p 0 1 0
chr1:1785379|1785639 hsa-miR-6805-3p 1 0 0
chr1:1785379|1785639 hsa-miR-10392-3p 1 0 0
chr1:1785379|1785639 hsa-miR-5006-3p 1 0 0
chr1:1785379|1785639 hsa-miR-6838-5p 1 1 0
chr1:1785379|1785639 hsa-miR-129-1-3p 1 0 0
chr1:1785379|1785639 hsa-miR-129-2-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:1785379|1785639
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MPDPGLPQGHSTVLYRMLQKTGWRSHYCCYEGVRGAGRGVPQNLLSKRCC
Nucleotide Sequence TTGCCAGATCCAGGCCTACCGCAAGGTCACAGCACAGTTTTGTATAGAATGTTGCAGAAAACAGGATGGAGAAGCCACTACTGCTGCTATGAAGGAGTGCGGGGGGCGGGGCGGGGGGTCCCACAGAACCTGCTTTCCAAACGCTGCTGCTGA
CircID chr1:1785379|1785639
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MLDGKRKKGFHLYSLCQIQAYRKVTAQFCIECCRKQDGEATTAAMKECGGRGGGSHRTCFPNAAAEHW
Nucleotide Sequence TTGTTGGACGGAAAGAGAAAGAAGGGGTTTCATTTGTATTCTCTTTGCCAGATCCAGGCCTACCGCAAGGTCACAGCACAGTTTTGTATAGAATGTTGCAGAAAACAGGATGGAGAAGCCACTACTGCTGCTATGAAGGAGTGCGGGGGGCGGGGCGGGGGGTCCCACAGAACCTGCTTTCCAAACGCTGCTGCTGAACACTGG
CircID chr1:1785379|1785639
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MFSATFYTKLCCDLAVGLDLAKRIQMKPLLSLSVQQLCRALCTLTPFHLLYLIL
Nucleotide Sequence CTGTTTTCTGCAACATTCTATACAAAACTGTGCTGTGACCTTGCGGTAGGCCTGGATCTGGCAAAGAGAATACAAATGAAACCCCTTCTTTCTCTTTCCGTCCAACAACTCTGTAGAGCTCTCTGCACCCTTACCCCTTTCCACCTTTTGTATTTAATTTTA
CircID chr1:1785379|1785639
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MWDPPPRPPHSFIAAVVASPSCFLQHSIQNCAVTLR
Nucleotide Sequence CTGTGGGACCCCCCGCCCCGCCCCCCGCACTCCTTCATAGCAGCAGTAGTGGCTTCTCCATCCTGTTTTCTGCAACATTCTATACAAAACTGTGCTGTGACCTTGCGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab