CircRNA Information

General Information
circRNA Basic Information
CircID chr1:1785557|1785686
Strand -
CircType exon
Host Gene ENSG00000078369.16;
Algorism CIRI2;
Sequence TACTGCTGCTATGAAGGAGTGCGGGGGGCGGGGCGGGGGGTCCCACAGAACCTGCTTTCCAAACGCTGCTGCTGAACACTGGCCTTGAAATGAACACCAGGACAATCTGTGTGTGATGGGAATGAGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:1785557|1785686 hsa-miR-15a-5p 0 0 1
chr1:1785557|1785686 hsa-miR-15a-3p 0 0 1
chr1:1785557|1785686 hsa-miR-205-5p 0 0 1
chr1:1785557|1785686 hsa-miR-205-3p 0 0 1
chr1:1785557|1785686 hsa-miR-214-5p 0 0 1
chr1:1785557|1785686 hsa-miR-214-3p 0 0 1
chr1:1785557|1785686 hsa-miR-15b-5p 0 0 1
chr1:1785557|1785686 hsa-miR-15b-3p 0 0 1
chr1:1785557|1785686 hsa-miR-195-5p 0 0 1
chr1:1785557|1785686 hsa-miR-195-3p 0 0 1
chr1:1785557|1785686 hsa-miR-377-5p 0 0 1
chr1:1785557|1785686 hsa-miR-377-3p 0 0 1
chr1:1785557|1785686 hsa-miR-424-5p 0 0 1
chr1:1785557|1785686 hsa-miR-424-3p 0 0 1
chr1:1785557|1785686 hsa-miR-376b-5p 0 0 1
chr1:1785557|1785686 hsa-miR-376b-3p 0 0 1
chr1:1785557|1785686 hsa-miR-497-5p 0 0 1
chr1:1785557|1785686 hsa-miR-497-3p 0 0 1
chr1:1785557|1785686 hsa-miR-498-5p 0 0 1
chr1:1785557|1785686 hsa-miR-498-3p 0 0 1
chr1:1785557|1785686 hsa-miR-503-5p 0 0 1
chr1:1785557|1785686 hsa-miR-503-3p 0 0 1
chr1:1785557|1785686 hsa-miR-579-5p 0 0 1
chr1:1785557|1785686 hsa-miR-579-3p 0 0 1
chr1:1785557|1785686 hsa-miR-646 0 0 1
chr1:1785557|1785686 hsa-miR-657 0 1 1
chr1:1785557|1785686 hsa-miR-922 0 0 1
chr1:1785557|1785686 hsa-miR-1206 0 0 1
chr1:1785557|1785686 hsa-miR-199a-5p 0 1 1
chr1:1785557|1785686 hsa-miR-199b-5p 0 1 1
chr1:1785557|1785686 hsa-miR-483-3p 0 0 1
chr1:1785557|1785686 hsa-miR-16 0 0 1
chr1:1785557|1785686 hsa-miR-24 0 0 1
chr1:1785557|1785686 hsa-miR-376a 0 0 1
chr1:1785557|1785686 hsa-miR-219-5p 0 0 1
chr1:1785557|1785686 hsa-miR-940 1 0 0
chr1:1785557|1785686 hsa-miR-1470 1 1 0
chr1:1785557|1785686 hsa-miR-1913 0 1 0
chr1:1785557|1785686 hsa-miR-4255 0 1 0
chr1:1785557|1785686 hsa-miR-3918 1 0 0
chr1:1785557|1785686 hsa-miR-3978 0 1 0
chr1:1785557|1785686 hsa-miR-134-3p 0 1 0
chr1:1785557|1785686 hsa-miR-152-5p 0 1 0
chr1:1785557|1785686 hsa-miR-4665-3p 1 0 0
chr1:1785557|1785686 hsa-miR-124-5p 1 1 0
chr1:1785557|1785686 hsa-miR-1972 1 0 0
chr1:1785557|1785686 hsa-miR-1225-3p 0 1 0
chr1:1785557|1785686 hsa-miR-6763-3p 1 0 0
chr1:1785557|1785686 hsa-miR-7108-3p 0 1 0
chr1:1785557|1785686 hsa-miR-4640-5p 1 0 0
chr1:1785557|1785686 hsa-miR-3922-5p 1 1 0
chr1:1785557|1785686 hsa-miR-6752-3p 0 1 0
chr1:1785557|1785686 hsa-miR-6795-3p 0 1 0
chr1:1785557|1785686 hsa-miR-6859-3p 0 1 0
chr1:1785557|1785686 hsa-miR-1249-3p 1 0 0
chr1:1785557|1785686 hsa-miR-4726-5p 1 0 0
chr1:1785557|1785686 hsa-miR-6731-5p 1 0 0
chr1:1785557|1785686 hsa-miR-10401-3p 0 1 0
chr1:1785557|1785686 hsa-miR-6837-5p 1 0 0
chr1:1785557|1785686 hsa-miR-4676-5p 1 0 0
chr1:1785557|1785686 hsa-miR-6838-5p 0 1 0
chr1:1785557|1785686 hsa-miR-154-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:1785557|1785686
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MKECGGRGGGSHRTCFPNAAAEHWP
Nucleotide Sequence ATGAAGGAGTGCGGGGGGCGGGGCGGGGGGTCCCACAGAACCTGCTTTCCAAACGCTGCTGCTGAACACTGGCCTTGA
CircID chr1:1785557|1785686
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MVFISRPVFSSSVWKAGSVGPPAPPPALLHSSS
Nucleotide Sequence CTGGTGTTCATTTCAAGGCCAGTGTTCAGCAGCAGCGTTTGGAAAGCAGGTTCTGTGGGACCCCCCGCCCCGCCCCCCGCACTCCTTCATAGCAGCAGT
CircID chr1:1785557|1785686
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MSWCSFQGQCSAAAFGKQVLWDPPPRPPHSFIAAV
Nucleotide Sequence TTGTCCTGGTGTTCATTTCAAGGCCAGTGTTCAGCAGCAGCGTTTGGAAAGCAGGTTCTGTGGGACCCCCCGCCCCGCCCCCCGCACTCCTTCATAGCAGCAGTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab