CircRNA Information

General Information
circRNA Basic Information
CircID chr1:179114878|179120274
Strand -
CircType exon
Host Gene ENSG00000143322.19;
Algorism find_circ;CIRI2;DCC;
Sequence GAAGATACCATGGAGGTAGAAGAATTCCTGAAAGAAGCTGCAGTAATGAAGGAAATCAAGCATCCTAATCTGGTACAACTTTTAGGTGTGTGTACTTTGGAGCCACCATTTTACATTGTGACTGAATACATGCCATACGGGAATTTGCTGGATTACCTCCGAGAATGCAACCGAGAAGAGGTGACTGCAGTTGTGCTGCTCTACATGGCCACTCAGATTTCTTCTGCAATGGAGTACTTAGAGAAGAAGAATTTCATCCATAGAGATCTTGCAGCTCGTAACTGCCTAGTGGGAGAAAACCATGTGGTAAAAGTGGCTGACTTTGGCTTAAGTAGATTGATGACTGGAGACACTTATACTGCTCATGCTGGAGCCAAATTTCCTATTAAGTGGACAGCACCAGAGAGTCTTGCCTACAATACCTTCTCAATTAAATCTGACGTCTGGGGTAAGGTTGAAAGGGACTTTTTTCTGTGTCATTTTATTTTTTTTTTTATAAATGCCTTGATTCTTTAGAGCTTCTCTTACGATGTTCAGTATCCTCTACCTTTACCTGCCATTCTTCTTCAGTTATTCAGCAAGCATTTGTTAAATACCTCCTATCTGCCAGGACTGTGTTAAGAACTTTGCATAAACAGAAGTATAGGCCTGGTGTGGTGGCTCACGTTTGTAATTACAGCACTTTGGGCCGAGATGGGTGGATCACTTGAGGTCAAGAGTTCGAGACCAGCCTGGCCAACATGGTGAACTCCCATCTCTACTAACTACAAAAATTAGCCAGGCGTGGTGGCATGCGCCAGTAATCCCAGCTATTCAAGAGGCTGAAGGCTGAGGCAGGGGAGTTGCTTGAGCCTGGAGGGCAGAGGTTGCAGTGAGCCAAGATGGCGCCACTGCACTCCAGCCTGGGCAATAGAGCGAGACTCTGTCTAAAAAGAAAAAAAAAAAAAAAAGTATAAACTTTTGGGGTATTGTTGTGGGAAATTGCTACCTATGGAATGTCACCATATCCAGGTATTGACCTGTCTCAGGTCTATGACCTACTAGAAAAAGGATATCGAATGGAACAGCCTGAGGGATGCCCCCCTAAGGTTTATGAACTTATGAGAGCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:179114878|179120274 hsa-miR-150-3p 0 1 1
chr1:179114878|179120274 hsa-miR-17-3p 0 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:179114878|179120274
ORF Type ORF1
Protein Length 169
Nucleotide Length 507
Protein Sequence MEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWGKVERDFFLCHFIFFFINALIL*
Nucleotide Sequence ATGGAGGTAGAAGAATTCCTGAAAGAAGCTGCAGTAATGAAGGAAATCAAGCATCCTAATCTGGTACAACTTTTAGGTGTGTGTACTTTGGAGCCACCATTTTACATTGTGACTGAATACATGCCATACGGGAATTTGCTGGATTACCTCCGAGAATGCAACCGAGAAGAGGTGACTGCAGTTGTGCTGCTCTACATGGCCACTCAGATTTCTTCTGCAATGGAGTACTTAGAGAAGAAGAATTTCATCCATAGAGATCTTGCAGCTCGTAACTGCCTAGTGGGAGAAAACCATGTGGTAAAAGTGGCTGACTTTGGCTTAAGTAGATTGATGACTGGAGACACTTATACTGCTCATGCTGGAGCCAAATTTCCTATTAAGTGGACAGCACCAGAGAGTCTTGCCTACAATACCTTCTCAATTAAATCTGACGTCTGGGGTAAGGTTGAAAGGGACTTTTTTCTGTGTCATTTTATTTTTTTTTTTATAAATGCCTTGATTCTTTAG
CircID chr1:179114878|179120274
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MGVHHVGQAGLELLTSSDPPISAQSAVITNVSHHTRPILLFMQSS*
Nucleotide Sequence ATGGGAGTTCACCATGTTGGCCAGGCTGGTCTCGAACTCTTGACCTCAAGTGATCCACCCATCTCGGCCCAAAGTGCTGTAATTACAAACGTGAGCCACCACACCAGGCCTATACTTCTGTTTATGCAAAGTTCTTAA
CircID chr1:179114878|179120274
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MLEPNFLLSGQHQRVLPTIPSQLNLTSGVRLKGTFFCVILFFFL*
Nucleotide Sequence ATGCTGGAGCCAAATTTCCTATTAAGTGGACAGCACCAGAGAGTCTTGCCTACAATACCTTCTCAATTAAATCTGACGTCTGGGGTAAGGTTGAAAGGGACTTTTTTCTGTGTCATTTTATTTTTTTTTTTATAA
CircID chr1:179114878|179120274
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MSPYPGIDLSQVYDLLEKGYRMEQPEGCPPKVYELMRA
Nucleotide Sequence ATGTCACCATATCCAGGTATTGACCTGTCTCAGGTCTATGACCTACTAGAAAAAGGATATCGAATGGAACAGCCTGAGGGATGCCCCCCTAAGGTTTATGAACTTATGAGAGCA
CircID chr1:179114878|179120274
ORF Type ORF5
Protein Length 33
Nucleotide Length 99
Protein Sequence MQPRRGDCSCAALHGHSDFFCNGVLREEEFHP*
Nucleotide Sequence ATGCAACCGAGAAGAGGTGACTGCAGTTGTGCTGCTCTACATGGCCACTCAGATTTCTTCTGCAATGGAGTACTTAGAGAAGAAGAATTTCATCCATAG
CircID chr1:179114878|179120274
ORF Type ORF6
Protein Length 79
Nucleotide Length 237
Protein Sequence VSFYFFFYKCLDSLELLLRCSVSSTFTCHSSSVIQQAFVKYLLSARTVLRTLHKQKYRPGVVAHVCNYSTLGRDGWIT*
Nucleotide Sequence GTGTCATTTTATTTTTTTTTTTATAAATGCCTTGATTCTTTAGAGCTTCTCTTACGATGTTCAGTATCCTCTACCTTTACCTGCCATTCTTCTTCAGTTATTCAGCAAGCATTTGTTAAATACCTCCTATCTGCCAGGACTGTGTTAAGAACTTTGCATAAACAGAAGTATAGGCCTGGTGTGGTGGCTCACGTTTGTAATTACAGCACTTTGGGCCGAGATGGGTGGATCACTTGA
CircID chr1:179114878|179120274
ORF Type ORF7
Protein Length 52
Nucleotide Length 156
Protein Sequence VLHCRRNLSGHVEQHNCSHLFSVAFSEVIQQIPVWHVFSHNVKWWLQSTHT*
Nucleotide Sequence GTACTCCATTGCAGAAGAAATCTGAGTGGCCATGTAGAGCAGCACAACTGCAGTCACCTCTTCTCGGTTGCATTCTCGGAGGTAATCCAGCAAATTCCCGTATGGCATGTATTCAGTCACAATGTAAAATGGTGGCTCCAAAGTACACACACCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:179114878|179120274 FMR1 0 1 11
chr1:179114878|179120274 DDX42 0 0 1
chr1:179114878|179120274 MOV10 0 0 1
chr1:179114878|179120274 ELAVL1 1 0 5
chr1:179114878|179120274 FXR1 0 1 1
chr1:179114878|179120274 DHX9 0 1 3
chr1:179114878|179120274 TBRG4 0 0 1
chr1:179114878|179120274 CNBP 0 0 1
chr1:179114878|179120274 CPSF7 0 0 1
chr1:179114878|179120274 NUDT21 1 0 0
chr1:179114878|179120274 SRSF1 1 0 4
chr1:179114878|179120274 NOP58 3 0 5
chr1:179114878|179120274 ADAR 0 0 1
chr1:179114878|179120274 U2AF2 12 0 20
chr1:179114878|179120274 NOP56 0 1 0
chr1:179114878|179120274 DDX54 0 0 11
chr1:179114878|179120274 EFTUD2 0 0 2
chr1:179114878|179120274 SF3A3 2 0 0
chr1:179114878|179120274 PTBP1 5 0 1
chr1:179114878|179120274 HNRNPC 7 19 10
chr1:179114878|179120274 TRA2A 1 0 2
chr1:179114878|179120274 ZNF184 0 0 1
chr1:179114878|179120274 HNRNPA1 0 0 3
chr1:179114878|179120274 DDX3X 0 1 1
chr1:179114878|179120274 ACIN1 3 0 6
chr1:179114878|179120274 LIN28B 0 0 2
chr1:179114878|179120274 NKRF 0 0 2
chr1:179114878|179120274 FXR2 0 0 3
chr1:179114878|179120274 IGF2BP1 0 0 2
chr1:179114878|179120274 BUD13 2 1 4
chr1:179114878|179120274 IGF2BP3 0 0 1
chr1:179114878|179120274 IGF2BP2 0 2 15
chr1:179114878|179120274 GTF2F1 0 0 1
chr1:179114878|179120274 PRPF8 1 3 2
chr1:179114878|179120274 RBM47 0 0 5
chr1:179114878|179120274 CSTF2T 0 0 3
chr1:179114878|179120274 TARBP2 0 0 16
chr1:179114878|179120274 RBM22 0 2 0
chr1:179114878|179120274 FBL 0 0 4
chr1:179114878|179120274 ATXN2 0 0 2
chr1:179114878|179120274 EIF4A3 3 3 8
chr1:179114878|179120274 AGO2 0 0 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab