CircRNA Information

General Information
circRNA Basic Information
CircID chr1:183243275|183243476
Strand +
CircType exon
Host Gene ENSG00000058085.13;
Algorism CIRI2;
Sequence CCACTCACATGACATGGCTCCCGAGCCCTGAGATCTGTATCCCAAGAACCTCAGTTGAGAAATATTTATGGCAGCTTCACTGTTGCTCAAGAGCCTGGGTATTGTAGCAGCCTGGGGGCAGGTTGTCCCTAATGTTCTCCAAGTTCTTCACATCAGCCAGAATCCCATCTATGCTTGTCTCCAGCAAATGGAGGTGGCCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:183243275|183243476 hsa-miR-22-5p 0 0 1
chr1:183243275|183243476 hsa-miR-22-3p 0 0 1
chr1:183243275|183243476 hsa-miR-221-5p 0 0 1
chr1:183243275|183243476 hsa-miR-221-3p 0 0 1
chr1:183243275|183243476 hsa-miR-222-5p 0 0 1
chr1:183243275|183243476 hsa-miR-222-3p 0 0 1
chr1:183243275|183243476 hsa-miR-136-5p 0 0 1
chr1:183243275|183243476 hsa-miR-136-3p 0 0 1
chr1:183243275|183243476 hsa-miR-149-5p 0 0 1
chr1:183243275|183243476 hsa-miR-149-3p 0 0 1
chr1:183243275|183243476 hsa-miR-484 0 0 1
chr1:183243275|183243476 hsa-miR-432-5p 0 0 1
chr1:183243275|183243476 hsa-miR-432-3p 0 0 1
chr1:183243275|183243476 hsa-miR-526b-5p 0 0 1
chr1:183243275|183243476 hsa-miR-526b-3p 0 0 1
chr1:183243275|183243476 hsa-miR-620 0 1 1
chr1:183243275|183243476 hsa-miR-635 0 0 1
chr1:183243275|183243476 hsa-miR-890 0 0 1
chr1:183243275|183243476 hsa-miR-1287-5p 0 0 1
chr1:183243275|183243476 hsa-miR-1287-3p 0 0 1
chr1:183243275|183243476 hsa-miR-1266-5p 0 0 1
chr1:183243275|183243476 hsa-miR-1266-3p 0 0 1
chr1:183243275|183243476 hsa-miR-1270 0 0 1
chr1:183243275|183243476 hsa-miR-513c-5p 0 0 1
chr1:183243275|183243476 hsa-miR-513c-3p 0 0 1
chr1:183243275|183243476 hsa-miR-127-5p 0 0 1
chr1:183243275|183243476 hsa-miR-361-3p 0 1 1
chr1:183243275|183243476 hsa-miR-338-5p 0 1 1
chr1:183243275|183243476 hsa-miR-324-3p 0 0 1
chr1:183243275|183243476 hsa-miR-769-3p 1 0 1
chr1:183243275|183243476 hsa-miR-450b-3p 0 0 1
chr1:183243275|183243476 hsa-miR-1253 1 0 0
chr1:183243275|183243476 hsa-miR-1913 1 1 0
chr1:183243275|183243476 hsa-miR-3155a 0 1 0
chr1:183243275|183243476 hsa-miR-3185 1 0 0
chr1:183243275|183243476 hsa-miR-3929 1 0 0
chr1:183243275|183243476 hsa-miR-3135b 1 1 0
chr1:183243275|183243476 hsa-miR-3155b 0 1 0
chr1:183243275|183243476 hsa-miR-4518 0 1 0
chr1:183243275|183243476 hsa-miR-4538 1 0 0
chr1:183243275|183243476 hsa-miR-8089 1 0 0
chr1:183243275|183243476 hsa-miR-12127 1 0 0
chr1:183243275|183243476 hsa-miR-3150a-3p 1 0 0
chr1:183243275|183243476 hsa-miR-4687-3p 1 0 0
chr1:183243275|183243476 hsa-miR-125a-3p 1 0 0
chr1:183243275|183243476 hsa-miR-7114-5p 1 0 0
chr1:183243275|183243476 hsa-miR-6757-5p 1 0 0
chr1:183243275|183243476 hsa-miR-3064-5p 1 1 0
chr1:183243275|183243476 hsa-miR-3928-3p 1 0 0
chr1:183243275|183243476 hsa-miR-6842-3p 1 0 0
chr1:183243275|183243476 hsa-miR-197-5p 1 0 0
chr1:183243275|183243476 hsa-miR-6827-5p 1 1 0
chr1:183243275|183243476 hsa-miR-5088-5p 0 1 0
chr1:183243275|183243476 hsa-miR-3944-3p 1 0 0
chr1:183243275|183243476 hsa-miR-4640-5p 1 0 0
chr1:183243275|183243476 hsa-miR-3127-5p 0 1 0
chr1:183243275|183243476 hsa-miR-3614-5p 1 0 0
chr1:183243275|183243476 hsa-miR-6802-5p 1 0 0
chr1:183243275|183243476 hsa-miR-450a-2-3p 0 1 0
chr1:183243275|183243476 hsa-miR-887-5p 0 1 0
chr1:183243275|183243476 hsa-miR-6752-3p 1 0 0
chr1:183243275|183243476 hsa-miR-6748-3p 0 1 0
chr1:183243275|183243476 hsa-miR-4709-5p 0 1 0
chr1:183243275|183243476 hsa-miR-6774-5p 1 1 0
chr1:183243275|183243476 hsa-miR-10396a-5p 1 0 0
chr1:183243275|183243476 hsa-miR-6855-5p 1 1 0
chr1:183243275|183243476 hsa-miR-3085-3p 1 0 0
chr1:183243275|183243476 hsa-miR-6859-5p 1 0 0
chr1:183243275|183243476 hsa-miR-433-5p 0 1 0
chr1:183243275|183243476 hsa-miR-10522-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:183243275|183243476
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MRSVSQEPQLRNIYGSFTVAQEPGYCSSLGAGCP
Nucleotide Sequence CTGAGATCTGTATCCCAAGAACCTCAGTTGAGAAATATTTATGGCAGCTTCACTGTTGCTCAAGAGCCTGGGTATTGTAGCAGCCTGGGGGCAGGTTGTCCCTAA
CircID chr1:183243275|183243476
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MAASLLLKSLGIVAAWGQVVPNVLQVLHISQNPIYACLQQMEVAP
Nucleotide Sequence ATGGCAGCTTCACTGTTGCTCAAGAGCCTGGGTATTGTAGCAGCCTGGGGGCAGGTTGTCCCTAATGTTCTCCAAGTTCTTCACATCAGCCAGAATCCCATCTATGCTTGTCTCCAGCAAATGGAGGTGGCCCCT
CircID chr1:183243275|183243476
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MTWLPSPEICIPRTSVEKYLWQLHCCSRAWVL
Nucleotide Sequence ATGACATGGCTCCCGAGCCCTGAGATCTGTATCCCAAGAACCTCAGTTGAGAAATATTTATGGCAGCTTCACTGTTGCTCAAGAGCCTGGGTATTGTAG
CircID chr1:183243275|183243476
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MSLMFSKFFTSARIPSMLVSSKWRWP
Nucleotide Sequence TTGTCCCTAATGTTCTCCAAGTTCTTCACATCAGCCAGAATCCCATCTATGCTTGTCTCCAGCAAATGGAGGTGGCCC
CircID chr1:183243275|183243476
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MLETSIDGILADVKNLENIRDNLPPGCYNTQALEQQ
Nucleotide Sequence TTGCTGGAGACAAGCATAGATGGGATTCTGGCTGATGTGAAGAACTTGGAGAACATTAGGGACAACCTGCCCCCAGGCTGCTACAATACCCAGGCTCTTGAGCAACAGTGA
CircID chr1:183243275|183243476
ORF Type ORF6
Protein Length 30
Nucleotide Length 90
Protein Sequence MSNSEAAINISQLRFLGYRSQGSGAMSCEW
Nucleotide Sequence TTGAGCAACAGTGAAGCTGCCATAAATATTTCTCAACTGAGGTTCTTGGGATACAGATCTCAGGGCTCGGGAGCCATGTCATGTGAGTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab