CircRNA Information

General Information
circRNA Basic Information
CircID chr1:18872429|18872587
Strand -
CircType exon
Host Gene ENSG00000159423.15;
Algorism CIRI2;
Sequence CTGGAGGGGCAGGGATCAAGGCCAGGAGCCTCTGTGAGTGGTGAGGTTTGCCAAGGGGCCCAGAATGGCCTCCTTTTCCCCAAAGGATCCCAAGAGCTGCTCCATCTCCTTTCCCCAGGTCCCTGAGCCACTGGGCCCAGTGGAGGGCAGAGGGAGAAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:18872429|18872587 hsa-miR-197-5p 0 0 1
chr1:18872429|18872587 hsa-miR-197-3p 0 0 1
chr1:18872429|18872587 hsa-miR-182-5p 0 0 1
chr1:18872429|18872587 hsa-miR-182-3p 0 0 1
chr1:18872429|18872587 hsa-miR-492 0 0 1
chr1:18872429|18872587 hsa-miR-612 0 0 1
chr1:18872429|18872587 hsa-miR-631 0 0 1
chr1:18872429|18872587 hsa-miR-635 0 0 1
chr1:18872429|18872587 hsa-miR-638 0 0 1
chr1:18872429|18872587 hsa-miR-640 0 0 1
chr1:18872429|18872587 hsa-miR-646 0 0 1
chr1:18872429|18872587 hsa-miR-1266-5p 0 0 1
chr1:18872429|18872587 hsa-miR-1266-3p 0 0 1
chr1:18872429|18872587 hsa-miR-296-5p 0 0 1
chr1:18872429|18872587 hsa-miR-501-5p 0 0 1
chr1:18872429|18872587 hsa-miR-324-3p 0 0 1
chr1:18872429|18872587 hsa-miR-769-3p 0 0 1
chr1:18872429|18872587 hsa-miR-450b-3p 0 0 1
chr1:18872429|18872587 hsa-miR-220b 0 0 1
chr1:18872429|18872587 hsa-miR-642 0 0 1
chr1:18872429|18872587 hsa-miR-1285 0 0 1
chr1:18872429|18872587 hsa-miR-24 0 0 1
chr1:18872429|18872587 hsa-miR-2861 1 0 0
chr1:18872429|18872587 hsa-miR-4298 1 0 0
chr1:18872429|18872587 hsa-miR-1268b 1 0 0
chr1:18872429|18872587 hsa-miR-4656 1 0 0
chr1:18872429|18872587 hsa-miR-4688 1 0 0
chr1:18872429|18872587 hsa-miR-6081 1 0 0
chr1:18872429|18872587 hsa-miR-6088 1 0 0
chr1:18872429|18872587 hsa-miR-8089 1 0 0
chr1:18872429|18872587 hsa-miR-12115 1 0 0
chr1:18872429|18872587 hsa-miR-210-5p 1 0 0
chr1:18872429|18872587 hsa-miR-6746-5p 1 0 0
chr1:18872429|18872587 hsa-miR-7109-3p 1 0 0
chr1:18872429|18872587 hsa-miR-4640-5p 1 0 0
chr1:18872429|18872587 hsa-miR-877-5p 1 0 0
chr1:18872429|18872587 hsa-miR-6749-5p 1 0 0
chr1:18872429|18872587 hsa-miR-1229-3p 1 0 0
chr1:18872429|18872587 hsa-miR-6812-5p 1 0 0
chr1:18872429|18872587 hsa-miR-6743-5p 1 0 0
chr1:18872429|18872587 hsa-miR-6851-5p 1 0 0
chr1:18872429|18872587 hsa-miR-7107-5p 1 0 0
chr1:18872429|18872587 hsa-miR-5196-5p 1 0 0
chr1:18872429|18872587 hsa-miR-4632-5p 1 0 0
chr1:18872429|18872587 hsa-miR-939-5p 1 0 0
chr1:18872429|18872587 hsa-miR-6876-5p 1 0 0
chr1:18872429|18872587 hsa-miR-4716-3p 1 0 0
chr1:18872429|18872587 hsa-miR-6724-5p 1 0 0
chr1:18872429|18872587 hsa-miR-6791-5p 1 0 0
chr1:18872429|18872587 hsa-miR-6862-3p 1 0 0
chr1:18872429|18872587 hsa-miR-10401-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:18872429|18872587
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence LEGQGSRPGASVSGEVCQGAQNGLLFPKGSQELLHLLSPGP
Nucleotide Sequence CTGGAGGGGCAGGGATCAAGGCCAGGAGCCTCTGTGAGTGGTGAGGTTTGCCAAGGGGCCCAGAATGGCCTCCTTTTCCCCAAAGGATCCCAAGAGCTGCTCCATCTCCTTTCCCCAGGTCCCTGA
CircID chr1:18872429|18872587
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MASFSPKDPKSCSISFPQVPEPLGPVEGRGR
Nucleotide Sequence ATGGCCTCCTTTTCCCCAAAGGATCCCAAGAGCTGCTCCATCTCCTTTCCCCAGGTCCCTGAGCCACTGGGCCCAGTGGAGGGCAGAGGGAGA
CircID chr1:18872429|18872587
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MPRGPEWPPFPQRIPRAAPSPFPRSLSHWAQWRAEGE
Nucleotide Sequence TTGCCAAGGGGCCCAGAATGGCCTCCTTTTCCCCAAAGGATCCCAAGAGCTGCTCCATCTCCTTTCCCCAGGTCCCTGAGCCACTGGGCCCAGTGGAGGGCAGAGGGAGAA
CircID chr1:18872429|18872587
ORF Type ORF4
Protein Length 44
Nucleotide Length 135
Protein Sequence MPSTGPSGSGTWGKEMEQLLGSFGEKEAILGPLANLTTHRGSWP
Nucleotide Sequence CTGCCCTCCACTGGGCCCAGTGGCTCAGGGACCTGGGGAAAGGAGATGGAGCAGCTCTTGGGATCCTTTGGGGAAAAGGAGGCCATTCTGGGCCCCTTGGCAAACCTCACCACTCACAGAGGCTCCTGGCCTTGA
CircID chr1:18872429|18872587
ORF Type ORF5
Protein Length 46
Nucleotide Length 138
Protein Sequence MGPVAQGPGERRWSSSWDPLGKRRPFWAPWQTSPLTEAPGLDPCPS
Nucleotide Sequence CTGGGCCCAGTGGCTCAGGGACCTGGGGAAAGGAGATGGAGCAGCTCTTGGGATCCTTTGGGGAAAAGGAGGCCATTCTGGGCCCCTTGGCAAACCTCACCACTCACAGAGGCTCCTGGCCTTGATCCCTGCCCCTCC
CircID chr1:18872429|18872587
ORF Type ORF6
Protein Length 39
Nucleotide Length 117
Protein Sequence MGKGDGAALGILWGKGGHSGPLGKPHHSQRLLALIPAPP
Nucleotide Sequence CTGGGGAAAGGAGATGGAGCAGCTCTTGGGATCCTTTGGGGAAAAGGAGGCCATTCTGGGCCCCTTGGCAAACCTCACCACTCACAGAGGCTCCTGGCCTTGATCCCTGCCCCTCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab