CircRNA Information

General Information
circRNA Basic Information
CircID chr1:18950737|18950887
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCACCTGCTTGAGGGCCCCCCTGGGGTGTGACGGGAATGGGCGGGGGACACTCCAGCTGACCCACCCACCATCCCTTTTTGGAGTCCTCCATTCCAGCCGACAGCCCAGCCCCTTCCGGCTCACAGTCAGAAATAGCTGTGACAAAAGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:18950737|18950887 hsa-miR-122-5p 0 0 1
chr1:18950737|18950887 hsa-miR-122-3p 0 0 1
chr1:18950737|18950887 hsa-miR-206 0 0 1
chr1:18950737|18950887 hsa-miR-345-5p 0 0 1
chr1:18950737|18950887 hsa-miR-345-3p 0 0 1
chr1:18950737|18950887 hsa-miR-613 0 0 1
chr1:18950737|18950887 hsa-miR-765 0 0 1
chr1:18950737|18950887 hsa-miR-541-5p 0 0 1
chr1:18950737|18950887 hsa-miR-541-3p 0 0 1
chr1:18950737|18950887 hsa-miR-943 0 0 1
chr1:18950737|18950887 hsa-miR-1228-5p 0 0 1
chr1:18950737|18950887 hsa-miR-1228-3p 0 0 1
chr1:18950737|18950887 hsa-miR-1293 0 0 1
chr1:18950737|18950887 hsa-miR-1247-5p 0 0 1
chr1:18950737|18950887 hsa-miR-1247-3p 0 0 1
chr1:18950737|18950887 hsa-miR-654-5p 0 0 1
chr1:18950737|18950887 hsa-miR-1207-3p 0 0 1
chr1:18950737|18950887 hsa-miR-1 0 0 1
chr1:18950737|18950887 hsa-miR-220a 0 0 1
chr1:18950737|18950887 hsa-miR-608 1 1 0
chr1:18950737|18950887 hsa-miR-658 1 0 0
chr1:18950737|18950887 hsa-miR-762 1 0 0
chr1:18950737|18950887 hsa-miR-3147 1 0 0
chr1:18950737|18950887 hsa-miR-1193 0 1 0
chr1:18950737|18950887 hsa-miR-4430 0 1 0
chr1:18950737|18950887 hsa-miR-4486 1 0 0
chr1:18950737|18950887 hsa-miR-4488 1 0 0
chr1:18950737|18950887 hsa-miR-4492 1 1 0
chr1:18950737|18950887 hsa-miR-4505 1 1 0
chr1:18950737|18950887 hsa-miR-4507 1 0 0
chr1:18950737|18950887 hsa-miR-4508 1 0 0
chr1:18950737|18950887 hsa-miR-1587 1 1 0
chr1:18950737|18950887 hsa-miR-4651 1 0 0
chr1:18950737|18950887 hsa-miR-4656 1 0 0
chr1:18950737|18950887 hsa-miR-4706 1 0 0
chr1:18950737|18950887 hsa-miR-4721 1 0 0
chr1:18950737|18950887 hsa-miR-4739 1 0 0
chr1:18950737|18950887 hsa-miR-4741 1 1 0
chr1:18950737|18950887 hsa-miR-5787 1 0 0
chr1:18950737|18950887 hsa-miR-6085 1 1 0
chr1:18950737|18950887 hsa-miR-6125 1 0 0
chr1:18950737|18950887 hsa-miR-6860 1 0 0
chr1:18950737|18950887 hsa-miR-1843 0 1 0
chr1:18950737|18950887 hsa-miR-4433b-3p 1 0 0
chr1:18950737|18950887 hsa-miR-92a-1-5p 1 1 0
chr1:18950737|18950887 hsa-miR-6861-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6825-5p 1 0 0
chr1:18950737|18950887 hsa-miR-4687-3p 1 0 0
chr1:18950737|18950887 hsa-miR-6799-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6728-5p 1 1 0
chr1:18950737|18950887 hsa-miR-8071 1 0 0
chr1:18950737|18950887 hsa-miR-6759-5p 1 0 0
chr1:18950737|18950887 hsa-miR-8069 1 0 0
chr1:18950737|18950887 hsa-miR-6748-5p 1 1 0
chr1:18950737|18950887 hsa-miR-6793-5p 1 0 0
chr1:18950737|18950887 hsa-miR-185-3p 1 1 0
chr1:18950737|18950887 hsa-miR-6829-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6732-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6805-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6798-5p 0 1 0
chr1:18950737|18950887 hsa-miR-1224-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6782-5p 1 0 0
chr1:18950737|18950887 hsa-miR-5088-5p 1 1 0
chr1:18950737|18950887 hsa-miR-7108-3p 0 1 0
chr1:18950737|18950887 hsa-miR-3944-3p 1 0 0
chr1:18950737|18950887 hsa-miR-296-3p 1 0 0
chr1:18950737|18950887 hsa-miR-149-3p 1 0 0
chr1:18950737|18950887 hsa-miR-6789-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6781-5p 1 0 0
chr1:18950737|18950887 hsa-miR-4646-3p 0 1 0
chr1:18950737|18950887 hsa-miR-744-5p 1 0 0
chr1:18950737|18950887 hsa-miR-4802-5p 0 1 0
chr1:18950737|18950887 hsa-miR-4763-3p 1 0 0
chr1:18950737|18950887 hsa-miR-6769b-5p 1 1 0
chr1:18950737|18950887 hsa-miR-6787-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6816-5p 1 0 0
chr1:18950737|18950887 hsa-miR-5001-5p 1 1 0
chr1:18950737|18950887 hsa-miR-6737-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6743-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6754-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6756-5p 1 1 0
chr1:18950737|18950887 hsa-miR-6769a-5p 1 1 0
chr1:18950737|18950887 hsa-miR-6813-5p 1 1 0
chr1:18950737|18950887 hsa-miR-6780a-5p 1 0 0
chr1:18950737|18950887 hsa-miR-3620-5p 1 1 0
chr1:18950737|18950887 hsa-miR-4728-5p 1 0 0
chr1:18950737|18950887 hsa-miR-5189-5p 1 0 0
chr1:18950737|18950887 hsa-miR-5196-5p 1 0 0
chr1:18950737|18950887 hsa-miR-10526-3p 1 0 0
chr1:18950737|18950887 hsa-miR-1237-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6794-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6846-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6848-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6885-5p 0 1 0
chr1:18950737|18950887 hsa-miR-4758-5p 1 0 0
chr1:18950737|18950887 hsa-miR-3940-5p 1 0 0
chr1:18950737|18950887 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:18950737|18950887
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MRAPLGCDGNGRGTLQLTHPPSLFGVLHSSRQPSPFRLTVRNSCDKS
Nucleotide Sequence TTGAGGGCCCCCCTGGGGTGTGACGGGAATGGGCGGGGGACACTCCAGCTGACCCACCCACCATCCCTTTTTGGAGTCCTCCATTCCAGCCGACAGCCCAGCCCCTTCCGGCTCACAGTCAGAAATAGCTGTGACAAAAGT
CircID chr1:18950737|18950887
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MSQLFLTVSRKGLGCRLEWRTPKRDGGWVSWSVPRPFPSHPRGALKQV
Nucleotide Sequence TTGTCACAGCTATTTCTGACTGTGAGCCGGAAGGGGCTGGGCTGTCGGCTGGAATGGAGGACTCCAAAAAGGGATGGTGGGTGGGTCAGCTGGAGTGTCCCCCGCCCATTCCCGTCACACCCCAGGGGGGCCCTCAAGCAGGTG
CircID chr1:18950737|18950887
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MSAGMEDSKKGWWVGQLECPPPIPVTPQGGPQAG
Nucleotide Sequence CTGTCGGCTGGAATGGAGGACTCCAAAAAGGGATGGTGGGTGGGTCAGCTGGAGTGTCCCCCGCCCATTCCCGTCACACCCCAGGGGGGCCCTCAAGCAGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab