CircRNA Information

General Information
circRNA Basic Information
CircID chr1:19061056|19061190
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence GGATGAGGAAGCTGAGACTCAGAGACGGTAAGTATTTTCCCTGAGTTCACAAGCAGGGAAGTAGTAGAGCAGCAATATCAGATAAATGTAATTCAGATATTTATCTGATGCCAGAGATTTATCTCATTGCAGAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:19061056|19061190 hsa-miR-137-5p 0 0 1
chr1:19061056|19061190 hsa-miR-137-3p 0 0 1
chr1:19061056|19061190 hsa-miR-326 0 0 1
chr1:19061056|19061190 hsa-miR-510-5p 0 0 1
chr1:19061056|19061190 hsa-miR-510-3p 0 0 1
chr1:19061056|19061190 hsa-miR-577 0 0 1
chr1:19061056|19061190 hsa-miR-593-5p 0 0 1
chr1:19061056|19061190 hsa-miR-593-3p 0 0 1
chr1:19061056|19061190 hsa-miR-627-5p 0 0 1
chr1:19061056|19061190 hsa-miR-627-3p 0 0 1
chr1:19061056|19061190 hsa-miR-216b-5p 0 0 1
chr1:19061056|19061190 hsa-miR-216b-3p 0 0 1
chr1:19061056|19061190 hsa-miR-924 0 0 1
chr1:19061056|19061190 hsa-miR-1266-5p 0 0 1
chr1:19061056|19061190 hsa-miR-1266-3p 0 0 1
chr1:19061056|19061190 hsa-miR-330-5p 0 0 1
chr1:19061056|19061190 hsa-miR-516a-3p 0 0 1
chr1:19061056|19061190 hsa-miR-1274a 0 0 1
chr1:19061056|19061190 hsa-miR-548k 0 1 0
chr1:19061056|19061190 hsa-miR-3921 0 1 0
chr1:19061056|19061190 hsa-miR-4518 1 1 0
chr1:19061056|19061190 hsa-miR-146a-3p 1 0 0
chr1:19061056|19061190 hsa-miR-3194-3p 1 1 0
chr1:19061056|19061190 hsa-miR-6743-3p 1 0 0
chr1:19061056|19061190 hsa-miR-5588-5p 0 1 0
chr1:19061056|19061190 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:19061056|19061190
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MASDKYLNYIYLILLLYYFPACELRENTYRL
Nucleotide Sequence CTGGCATCAGATAAATATCTGAATTACATTTATCTGATATTGCTGCTCTACTACTTCCCTGCTTGTGAACTCAGGGAAAATACTTACCGTCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab