CircRNA Information

General Information
circRNA Basic Information
CircID chr1:19110406|19110798
Strand +
CircType exon
Host Gene ENSG00000127481.13;
Algorism CIRI2;
Sequence CTGATTATTGGCAAGGTCTCCACAGCCCTGAAGGGCCACTGGGCCAACCCCGATCTGGTGAGCCGGCCTAGCAGGCCCAGCTGTCCTCTCTGACTTCCCCTCACATGCCTTGTGTTTCTCAGCTTCCCCTCCCAGGTCCTGCGGTGACTGAGGAGGGAAGGAGCAGAACATTACCCCAGAATGGTTTTCCCAGGGAAGAGCCTGGAGCACAAGGGTCTCCGTCTGTCCTTTGTCTCTGTTGGAGCCACCTAGGACCAGAAATTGTATTAATAGTTAAGAGTCGCTGGACCGGAGCTGACCCTCTTGACTCATGTCTCTTCCCATTGCCTTCTAGGCAAGTAGCCTGCAGTATGAAATGCTGCTGCTGACGGATTCTATCTCCAAGGAGGACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:19110406|19110798 hsa-miR-15a-5p 0 0 1
chr1:19110406|19110798 hsa-miR-15a-3p 0 0 1
chr1:19110406|19110798 hsa-miR-107 0 1 1
chr1:19110406|19110798 hsa-miR-214-5p 0 0 1
chr1:19110406|19110798 hsa-miR-214-3p 0 0 1
chr1:19110406|19110798 hsa-miR-217-5p 0 0 1
chr1:19110406|19110798 hsa-miR-217-3p 0 0 1
chr1:19110406|19110798 hsa-miR-15b-5p 0 0 1
chr1:19110406|19110798 hsa-miR-15b-3p 0 0 1
chr1:19110406|19110798 hsa-miR-195-5p 0 0 1
chr1:19110406|19110798 hsa-miR-195-3p 0 0 1
chr1:19110406|19110798 hsa-miR-328-5p 0 0 1
chr1:19110406|19110798 hsa-miR-328-3p 0 0 1
chr1:19110406|19110798 hsa-miR-335-5p 0 0 1
chr1:19110406|19110798 hsa-miR-335-3p 0 0 1
chr1:19110406|19110798 hsa-miR-424-5p 0 0 1
chr1:19110406|19110798 hsa-miR-424-3p 0 0 1
chr1:19110406|19110798 hsa-miR-484 0 0 1
chr1:19110406|19110798 hsa-miR-492 0 1 1
chr1:19110406|19110798 hsa-miR-432-5p 0 0 1
chr1:19110406|19110798 hsa-miR-432-3p 0 0 1
chr1:19110406|19110798 hsa-miR-497-5p 0 0 1
chr1:19110406|19110798 hsa-miR-497-3p 0 0 1
chr1:19110406|19110798 hsa-miR-539-5p 0 0 1
chr1:19110406|19110798 hsa-miR-539-3p 0 0 1
chr1:19110406|19110798 hsa-miR-620 0 0 1
chr1:19110406|19110798 hsa-miR-631 0 0 1
chr1:19110406|19110798 hsa-miR-637 0 0 1
chr1:19110406|19110798 hsa-miR-655-5p 0 0 1
chr1:19110406|19110798 hsa-miR-655-3p 0 0 1
chr1:19110406|19110798 hsa-miR-922 0 1 1
chr1:19110406|19110798 hsa-miR-1226-5p 0 0 1
chr1:19110406|19110798 hsa-miR-1226-3p 0 0 1
chr1:19110406|19110798 hsa-miR-1236-5p 0 0 1
chr1:19110406|19110798 hsa-miR-1236-3p 0 0 1
chr1:19110406|19110798 hsa-miR-663b 0 0 1
chr1:19110406|19110798 hsa-miR-1205 0 1 1
chr1:19110406|19110798 hsa-miR-1286 0 0 1
chr1:19110406|19110798 hsa-miR-1291 0 0 1
chr1:19110406|19110798 hsa-miR-1294 0 0 1
chr1:19110406|19110798 hsa-miR-1270 0 0 1
chr1:19110406|19110798 hsa-miR-769-5p 0 0 1
chr1:19110406|19110798 hsa-miR-423-5p 1 0 1
chr1:19110406|19110798 hsa-miR-1207-3p 0 1 1
chr1:19110406|19110798 hsa-miR-767-3p 0 0 1
chr1:19110406|19110798 hsa-miR-409-3p 0 0 1
chr1:19110406|19110798 hsa-miR-485-3p 0 0 1
chr1:19110406|19110798 hsa-miR-509-3-5p 0 0 1
chr1:19110406|19110798 hsa-miR-509-5p 0 0 1
chr1:19110406|19110798 hsa-miR-1274a 0 0 1
chr1:19110406|19110798 hsa-miR-642 0 0 1
chr1:19110406|19110798 hsa-miR-103 0 0 1
chr1:19110406|19110798 hsa-miR-16 0 0 1
chr1:19110406|19110798 hsa-miR-218 0 0 1
chr1:19110406|19110798 hsa-miR-1295 0 0 1
chr1:19110406|19110798 hsa-miR-608 1 0 0
chr1:19110406|19110798 hsa-miR-762 1 0 0
chr1:19110406|19110798 hsa-miR-2113 0 1 0
chr1:19110406|19110798 hsa-miR-1295a 1 1 0
chr1:19110406|19110798 hsa-miR-2861 1 1 0
chr1:19110406|19110798 hsa-miR-3132 1 0 0
chr1:19110406|19110798 hsa-miR-3155a 0 1 0
chr1:19110406|19110798 hsa-miR-3175 1 0 0
chr1:19110406|19110798 hsa-miR-4316 1 0 0
chr1:19110406|19110798 hsa-miR-4253 1 0 0
chr1:19110406|19110798 hsa-miR-4271 0 1 0
chr1:19110406|19110798 hsa-miR-3661 1 1 0
chr1:19110406|19110798 hsa-miR-3907 1 1 0
chr1:19110406|19110798 hsa-miR-3916 1 0 0
chr1:19110406|19110798 hsa-miR-3918 1 0 0
chr1:19110406|19110798 hsa-miR-4431 0 1 0
chr1:19110406|19110798 hsa-miR-4457 0 1 0
chr1:19110406|19110798 hsa-miR-3155b 0 1 0
chr1:19110406|19110798 hsa-miR-4498 1 0 0
chr1:19110406|19110798 hsa-miR-4525 1 0 0
chr1:19110406|19110798 hsa-miR-4656 1 0 0
chr1:19110406|19110798 hsa-miR-4675 1 1 0
chr1:19110406|19110798 hsa-miR-4683 1 0 0
chr1:19110406|19110798 hsa-miR-4688 1 0 0
chr1:19110406|19110798 hsa-miR-4689 1 0 0
chr1:19110406|19110798 hsa-miR-4710 1 0 0
chr1:19110406|19110798 hsa-miR-4739 1 1 0
chr1:19110406|19110798 hsa-miR-4741 1 0 0
chr1:19110406|19110798 hsa-miR-5091 0 1 0
chr1:19110406|19110798 hsa-miR-5193 0 1 0
chr1:19110406|19110798 hsa-miR-5194 1 0 0
chr1:19110406|19110798 hsa-miR-5693 0 1 0
chr1:19110406|19110798 hsa-miR-6085 1 0 0
chr1:19110406|19110798 hsa-miR-6132 1 1 0
chr1:19110406|19110798 hsa-miR-7974 0 1 0
chr1:19110406|19110798 hsa-miR-9986 1 0 0
chr1:19110406|19110798 hsa-miR-12119 1 0 0
chr1:19110406|19110798 hsa-miR-6734-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6747-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6825-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6822-3p 1 0 0
chr1:19110406|19110798 hsa-miR-6720-5p 1 0 0
chr1:19110406|19110798 hsa-miR-7851-3p 1 1 0
chr1:19110406|19110798 hsa-miR-6089 1 0 0
chr1:19110406|19110798 hsa-miR-3192-5p 0 1 0
chr1:19110406|19110798 hsa-miR-4695-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6727-5p 1 0 0
chr1:19110406|19110798 hsa-miR-3622b-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6759-5p 1 0 0
chr1:19110406|19110798 hsa-miR-1178-5p 0 1 0
chr1:19110406|19110798 hsa-miR-197-5p 1 0 0
chr1:19110406|19110798 hsa-miR-7845-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6742-5p 1 0 0
chr1:19110406|19110798 hsa-miR-1292-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6748-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6796-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6732-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6798-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6881-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6782-5p 1 0 0
chr1:19110406|19110798 hsa-miR-30b-3p 0 1 0
chr1:19110406|19110798 hsa-miR-5008-5p 1 0 0
chr1:19110406|19110798 hsa-miR-939-3p 1 0 0
chr1:19110406|19110798 hsa-miR-7109-5p 1 0 0
chr1:19110406|19110798 hsa-miR-2277-3p 1 0 0
chr1:19110406|19110798 hsa-miR-4640-5p 1 0 0
chr1:19110406|19110798 hsa-miR-3127-5p 1 1 0
chr1:19110406|19110798 hsa-miR-1228-5p 1 0 0
chr1:19110406|19110798 hsa-miR-296-3p 1 1 0
chr1:19110406|19110798 hsa-miR-92b-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6749-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6847-5p 0 1 0
chr1:19110406|19110798 hsa-miR-6834-5p 1 0 0
chr1:19110406|19110798 hsa-miR-103a-3p 0 1 0
chr1:19110406|19110798 hsa-miR-4667-3p 0 1 0
chr1:19110406|19110798 hsa-miR-6739-3p 0 1 0
chr1:19110406|19110798 hsa-miR-149-3p 1 1 0
chr1:19110406|19110798 hsa-miR-6736-3p 0 1 0
chr1:19110406|19110798 hsa-miR-937-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6824-5p 0 1 0
chr1:19110406|19110798 hsa-miR-6781-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6864-5p 1 0 0
chr1:19110406|19110798 hsa-miR-3922-5p 1 0 0
chr1:19110406|19110798 hsa-miR-7152-3p 0 1 0
chr1:19110406|19110798 hsa-miR-3191-3p 1 0 0
chr1:19110406|19110798 hsa-miR-5571-3p 0 1 0
chr1:19110406|19110798 hsa-miR-6828-3p 0 1 0
chr1:19110406|19110798 hsa-miR-5197-3p 1 1 0
chr1:19110406|19110798 hsa-miR-6734-3p 0 1 0
chr1:19110406|19110798 hsa-miR-4704-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6780b-3p 0 1 0
chr1:19110406|19110798 hsa-miR-589-5p 1 0 0
chr1:19110406|19110798 hsa-miR-16-5p 0 1 0
chr1:19110406|19110798 hsa-miR-1207-5p 1 0 0
chr1:19110406|19110798 hsa-miR-1233-5p 1 0 0
chr1:19110406|19110798 hsa-miR-1273h-5p 0 1 0
chr1:19110406|19110798 hsa-miR-6778-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6812-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6865-5p 0 1 0
chr1:19110406|19110798 hsa-miR-6893-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6726-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6743-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6752-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6756-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6815-5p 0 1 0
chr1:19110406|19110798 hsa-miR-7107-5p 1 0 0
chr1:19110406|19110798 hsa-miR-7110-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6779-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6780a-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6797-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6879-5p 1 0 0
chr1:19110406|19110798 hsa-miR-7111-5p 1 0 0
chr1:19110406|19110798 hsa-miR-4728-5p 1 1 0
chr1:19110406|19110798 hsa-miR-5196-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6780b-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6836-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6862-5p 1 0 0
chr1:19110406|19110798 hsa-miR-4632-5p 1 0 0
chr1:19110406|19110798 hsa-miR-4685-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6738-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6777-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6795-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6848-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6887-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6889-5p 1 0 0
chr1:19110406|19110798 hsa-miR-4723-5p 1 1 0
chr1:19110406|19110798 hsa-miR-6885-5p 1 0 0
chr1:19110406|19110798 hsa-miR-939-5p 1 1 0
chr1:19110406|19110798 hsa-miR-1266-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6856-5p 0 1 0
chr1:19110406|19110798 hsa-miR-1914-3p 1 0 0
chr1:19110406|19110798 hsa-miR-4646-5p 1 1 0
chr1:19110406|19110798 hsa-miR-4747-5p 1 0 0
chr1:19110406|19110798 hsa-miR-4472 1 0 0
chr1:19110406|19110798 hsa-miR-4716-3p 1 0 0
chr1:19110406|19110798 hsa-miR-6750-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6785-5p 0 1 0
chr1:19110406|19110798 hsa-miR-3184-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6724-5p 1 0 0
chr1:19110406|19110798 hsa-miR-6862-3p 1 0 0
chr1:19110406|19110798 hsa-miR-6859-5p 1 0 0
chr1:19110406|19110798 hsa-miR-10394-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:19110406|19110798
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence LIIGKVSTALKGHWANPDLVSRPSRPSCPL
Nucleotide Sequence CTGATTATTGGCAAGGTCTCCACAGCCCTGAAGGGCCACTGGGCCAACCCCGATCTGGTGAGCCGGCCTAGCAGGCCCAGCTGTCCTCTCTGA
CircID chr1:19110406|19110798
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MRREGAEHYPRMVFPGKSLEHKGLRLSFVSVGAT
Nucleotide Sequence CTGAGGAGGGAAGGAGCAGAACATTACCCCAGAATGGTTTTCCCAGGGAAGAGCCTGGAGCACAAGGGTCTCCGTCTGTCCTTTGTCTCTGTTGGAGCCACCTAG
CircID chr1:19110406|19110798
ORF Type ORF3
Protein Length 95
Nucleotide Length 288
Protein Sequence MSSLTSPHMPCVSQLPLPGPAVTEEGRSRTLPQNGFPREEPGAQGSPSVLCLCWSHLGPEIVLIVKSRWTGADPLDSCLFPLPSRQVACSMKCCC
Nucleotide Sequence CTGTCCTCTCTGACTTCCCCTCACATGCCTTGTGTTTCTCAGCTTCCCCTCCCAGGTCCTGCGGTGACTGAGGAGGGAAGGAGCAGAACATTACCCCAGAATGGTTTTCCCAGGGAAGAGCCTGGAGCACAAGGGTCTCCGTCTGTCCTTTGTCTCTGTTGGAGCCACCTAGGACCAGAAATTGTATTAATAGTTAAGAGTCGCTGGACCGGAGCTGACCCTCTTGACTCATGTCTCTTCCCATTGCCTTCTAGGCAAGTAGCCTGCAGTATGAAATGCTGCTGCTGA
CircID chr1:19110406|19110798
ORF Type ORF4
Protein Length 86
Nucleotide Length 258
Protein Sequence MVLGGSNRDKGQTETLVLQALPWENHSGVMFCSFPPQSPQDLGGEAEKHKACEGKSERTAGPARPAHQIGVGPVALQGCGDLANNQ
Nucleotide Sequence CTGGTCCTAGGTGGCTCCAACAGAGACAAAGGACAGACGGAGACCCTTGTGCTCCAGGCTCTTCCCTGGGAAAACCATTCTGGGGTAATGTTCTGCTCCTTCCCTCCTCAGTCACCGCAGGACCTGGGAGGGGAAGCTGAGAAACACAAGGCATGTGAGGGGAAGTCAGAGAGGACAGCTGGGCCTGCTAGGCCGGCTCACCAGATCGGGGTTGGCCCAGTGGCCCTTCAGGGCTGTGGAGACCTTGCCAATAATCAG
CircID chr1:19110406|19110798
ORF Type ORF5
Protein Length 40
Nucleotide Length 120
Protein Sequence MRNTRHVRGSQRGQLGLLGRLTRSGLAQWPFRAVETLPII
Nucleotide Sequence CTGAGAAACACAAGGCATGTGAGGGGAAGTCAGAGAGGACAGCTGGGCCTGCTAGGCCGGCTCACCAGATCGGGGTTGGCCCAGTGGCCCTTCAGGGCTGTGGAGACCTTGCCAATAATC
CircID chr1:19110406|19110798
ORF Type ORF6
Protein Length 76
Nucleotide Length 231
Protein Sequence MQATCLEGNGKRHESRGSAPVQRLLTINTISGPRWLQQRQRTDGDPCAPGSSLGKPFWGNVLLLPSSVTAGPGRGS
Nucleotide Sequence CTGCAGGCTACTTGCCTAGAAGGCAATGGGAAGAGACATGAGTCAAGAGGGTCAGCTCCGGTCCAGCGACTCTTAACTATTAATACAATTTCTGGTCCTAGGTGGCTCCAACAGAGACAAAGGACAGACGGAGACCCTTGTGCTCCAGGCTCTTCCCTGGGAAAACCATTCTGGGGTAATGTTCTGCTCCTTCCCTCCTCAGTCACCGCAGGACCTGGGAGGGGAAGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab