CircRNA Information

General Information
circRNA Basic Information
CircID chr1:19259482|19259676
Strand +
CircType exon
Host Gene ENSG00000053372.4;
Algorism CIRI2;
Sequence CCAGGACTGAAGAGAAACCCCAGCTCTGGTGTGGAGCTGTGCTGTCATGGCAGTGCCAAGGCAGCCAGTGGAAGTTGGCTGACAAGGCAAACTGAGGCAATCCACGCAGAATTCAATGGCCACCCAGGCTGGAGTGCAGTGGCATGATCATGGCTCACTGAGCCTCCAACTCTCAGGCTTAAGCAATTCTCCCAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:19259482|19259676 hsa-miR-96-5p 0 0 1
chr1:19259482|19259676 hsa-miR-96-3p 0 0 1
chr1:19259482|19259676 hsa-miR-571 0 0 1
chr1:19259482|19259676 hsa-miR-604 0 0 1
chr1:19259482|19259676 hsa-miR-647 0 1 1
chr1:19259482|19259676 hsa-miR-650 0 0 1
chr1:19259482|19259676 hsa-miR-661 1 0 1
chr1:19259482|19259676 hsa-miR-1271-5p 0 0 1
chr1:19259482|19259676 hsa-miR-1271-3p 0 0 1
chr1:19259482|19259676 hsa-miR-766-5p 0 0 1
chr1:19259482|19259676 hsa-miR-766-3p 0 0 1
chr1:19259482|19259676 hsa-miR-892b 0 1 1
chr1:19259482|19259676 hsa-miR-1236-5p 0 0 1
chr1:19259482|19259676 hsa-miR-1236-3p 0 0 1
chr1:19259482|19259676 hsa-miR-1293 1 0 1
chr1:19259482|19259676 hsa-miR-302f 0 0 1
chr1:19259482|19259676 hsa-miR-508-5p 0 0 1
chr1:19259482|19259676 hsa-miR-455-3p 0 0 1
chr1:19259482|19259676 hsa-miR-24 0 0 1
chr1:19259482|19259676 hsa-miR-768-5p 0 0 1
chr1:19259482|19259676 hsa-miR-637 1 0 0
chr1:19259482|19259676 hsa-miR-4276 0 1 0
chr1:19259482|19259676 hsa-miR-4739 1 0 0
chr1:19259482|19259676 hsa-miR-7703 0 1 0
chr1:19259482|19259676 hsa-miR-8056 0 1 0
chr1:19259482|19259676 hsa-miR-8085 1 0 0
chr1:19259482|19259676 hsa-miR-212-5p 0 1 0
chr1:19259482|19259676 hsa-miR-6894-5p 1 0 0
chr1:19259482|19259676 hsa-miR-6720-5p 1 1 0
chr1:19259482|19259676 hsa-miR-6746-5p 1 0 0
chr1:19259482|19259676 hsa-miR-3064-5p 0 1 0
chr1:19259482|19259676 hsa-miR-24-3p 0 1 0
chr1:19259482|19259676 hsa-miR-6759-5p 1 0 0
chr1:19259482|19259676 hsa-miR-3187-3p 0 1 0
chr1:19259482|19259676 hsa-miR-6849-3p 0 1 0
chr1:19259482|19259676 hsa-miR-2467-5p 0 1 0
chr1:19259482|19259676 hsa-miR-4793-3p 0 1 0
chr1:19259482|19259676 hsa-miR-6821-5p 0 1 0
chr1:19259482|19259676 hsa-miR-6882-3p 0 1 0
chr1:19259482|19259676 hsa-miR-6853-5p 1 0 0
chr1:19259482|19259676 hsa-miR-6736-3p 0 1 0
chr1:19259482|19259676 hsa-miR-6878-5p 0 1 0
chr1:19259482|19259676 hsa-miR-6890-3p 0 1 0
chr1:19259482|19259676 hsa-miR-6839-3p 1 1 0
chr1:19259482|19259676 hsa-miR-6726-5p 1 0 0
chr1:19259482|19259676 hsa-miR-6848-5p 1 1 0
chr1:19259482|19259676 hsa-miR-30c-1-3p 0 1 0
chr1:19259482|19259676 hsa-miR-3085-3p 0 1 0
chr1:19259482|19259676 hsa-miR-6817-5p 0 1 0
chr1:19259482|19259676 hsa-miR-6504-5p 0 1 0
chr1:19259482|19259676 hsa-miR-6807-3p 0 1 0
chr1:19259482|19259676 hsa-miR-367-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:19259482|19259676
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MKRNPSSGVELCCHGSAKAASGSWLTRQTEAIHAEFNGHPGWSAVA
Nucleotide Sequence CTGAAGAGAAACCCCAGCTCTGGTGTGGAGCTGTGCTGTCATGGCAGTGCCAAGGCAGCCAGTGGAAGTTGGCTGACAAGGCAAACTGAGGCAATCCACGCAGAATTCAATGGCCACCCAGGCTGGAGTGCAGTGGCATGA
CircID chr1:19259482|19259676
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MRQSTQNSMATQAGVQWHDHGSLSLQLSGLSNSP
Nucleotide Sequence CTGAGGCAATCCACGCAGAATTCAATGGCCACCCAGGCTGGAGTGCAGTGGCATGATCATGGCTCACTGAGCCTCCAACTCTCAGGCTTAAGCAATTCTCCC
CircID chr1:19259482|19259676
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MPCQPTSTGCLGTAMTAQLHTRAGVSLQSW
Nucleotide Sequence TTGCCTTGTCAGCCAACTTCCACTGGCTGCCTTGGCACTGCCATGACAGCACAGCTCCACACCAGAGCTGGGGTTTCTCTTCAGTCCTGG
CircID chr1:19259482|19259676
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MRVGGSVSHDHATALQPGWPLNSAWIASVCLVSQLPLAALALP
Nucleotide Sequence CTGAGAGTTGGAGGCTCAGTGAGCCATGATCATGCCACTGCACTCCAGCCTGGGTGGCCATTGAATTCTGCGTGGATTGCCTCAGTTTGCCTTGTCAGCCAACTTCCACTGGCTGCCTTGGCACTGCCATGA
CircID chr1:19259482|19259676
ORF Type ORF5
Protein Length 36
Nucleotide Length 108
Protein Sequence MRGLPQFALSANFHWLPWHCHDSTAPHQSWGFSSVL
Nucleotide Sequence CTGCGTGGATTGCCTCAGTTTGCCTTGTCAGCCAACTTCCACTGGCTGCCTTGGCACTGCCATGACAGCACAGCTCCACACCAGAGCTGGGGTTTCTCTTCAGTCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab