CircRNA Information

General Information
circRNA Basic Information
CircID chr1:19327901|19328096
Strand -
CircType exon
Host Gene ENSG00000040487.11;
Algorism CIRI2;
Sequence ACATGACTTGGTCAGACAAACCTGGGTTCAAATCCTGGCTCCTCCCCTGCTTCCTAGCTGTGTGACGCAGGGCACACAGTCAACCTCTCTGTGCTGCCGTGTCTTCACCTCAGTTAACAGCCACTGTCTCGTCAGGATGTTGTGTAAGATGAGGTATCTGGAAACACTCCCCACAGGACCCCGTTTTCAGTGAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:19327901|19328096 hsa-miR-122-5p 0 0 1
chr1:19327901|19328096 hsa-miR-122-3p 0 0 1
chr1:19327901|19328096 hsa-miR-377-5p 0 0 1
chr1:19327901|19328096 hsa-miR-377-3p 0 0 1
chr1:19327901|19328096 hsa-miR-563 0 0 1
chr1:19327901|19328096 hsa-miR-570-5p 0 0 1
chr1:19327901|19328096 hsa-miR-570-3p 0 0 1
chr1:19327901|19328096 hsa-miR-600 0 0 1
chr1:19327901|19328096 hsa-miR-632 0 0 1
chr1:19327901|19328096 hsa-miR-765 0 1 1
chr1:19327901|19328096 hsa-miR-892a 0 1 1
chr1:19327901|19328096 hsa-miR-874-5p 0 0 1
chr1:19327901|19328096 hsa-miR-874-3p 0 0 1
chr1:19327901|19328096 hsa-miR-939-5p 0 0 1
chr1:19327901|19328096 hsa-miR-939-3p 0 0 1
chr1:19327901|19328096 hsa-miR-943 0 1 1
chr1:19327901|19328096 hsa-miR-1231 0 0 1
chr1:19327901|19328096 hsa-miR-491-5p 0 1 1
chr1:19327901|19328096 hsa-miR-615-5p 0 0 1
chr1:19327901|19328096 hsa-miR-146b-3p 0 0 1
chr1:19327901|19328096 hsa-miR-525-5p 0 0 1
chr1:19327901|19328096 hsa-miR-875-5p 0 0 1
chr1:19327901|19328096 hsa-miR-520a-5p 0 0 1
chr1:19327901|19328096 hsa-miR-449a 0 1 0
chr1:19327901|19328096 hsa-miR-3195 1 0 0
chr1:19327901|19328096 hsa-miR-4672 0 1 0
chr1:19327901|19328096 hsa-miR-4739 1 0 0
chr1:19327901|19328096 hsa-miR-5693 0 1 0
chr1:19327901|19328096 hsa-miR-5787 1 0 0
chr1:19327901|19328096 hsa-miR-6072 0 1 0
chr1:19327901|19328096 hsa-miR-6133 1 0 0
chr1:19327901|19328096 hsa-miR-7150 1 0 0
chr1:19327901|19328096 hsa-miR-12127 0 1 0
chr1:19327901|19328096 hsa-miR-4726-3p 1 1 0
chr1:19327901|19328096 hsa-miR-671-5p 1 0 0
chr1:19327901|19328096 hsa-miR-3150a-3p 0 1 0
chr1:19327901|19328096 hsa-miR-7106-5p 1 1 0
chr1:19327901|19328096 hsa-miR-6894-5p 1 0 0
chr1:19327901|19328096 hsa-miR-4687-3p 1 1 0
chr1:19327901|19328096 hsa-miR-125a-3p 1 0 0
chr1:19327901|19328096 hsa-miR-6510-5p 1 1 0
chr1:19327901|19328096 hsa-miR-3622a-5p 1 1 0
chr1:19327901|19328096 hsa-miR-6089 1 0 0
chr1:19327901|19328096 hsa-miR-4695-5p 1 1 0
chr1:19327901|19328096 hsa-miR-505-5p 1 1 0
chr1:19327901|19328096 hsa-miR-3622b-5p 1 0 0
chr1:19327901|19328096 hsa-miR-200b-5p 0 1 0
chr1:19327901|19328096 hsa-miR-3180-3p 1 0 0
chr1:19327901|19328096 hsa-miR-6798-5p 1 0 0
chr1:19327901|19328096 hsa-miR-6782-5p 1 0 0
chr1:19327901|19328096 hsa-miR-4793-5p 0 1 0
chr1:19327901|19328096 hsa-miR-885-3p 1 0 0
chr1:19327901|19328096 hsa-miR-4690-5p 1 0 0
chr1:19327901|19328096 hsa-miR-4787-5p 1 0 0
chr1:19327901|19328096 hsa-miR-6824-5p 1 0 0
chr1:19327901|19328096 hsa-miR-6789-5p 1 0 0
chr1:19327901|19328096 hsa-miR-3162-5p 1 1 0
chr1:19327901|19328096 hsa-miR-6828-5p 0 1 0
chr1:19327901|19328096 hsa-miR-7162-3p 0 1 0
chr1:19327901|19328096 hsa-miR-6792-5p 1 0 0
chr1:19327901|19328096 hsa-miR-338-5p 0 1 0
chr1:19327901|19328096 hsa-miR-4777-3p 0 1 0
chr1:19327901|19328096 hsa-miR-5003-5p 0 1 0
chr1:19327901|19328096 hsa-miR-1207-5p 1 0 0
chr1:19327901|19328096 hsa-miR-4763-3p 1 0 0
chr1:19327901|19328096 hsa-miR-6778-5p 1 0 0
chr1:19327901|19328096 hsa-miR-6812-5p 0 1 0
chr1:19327901|19328096 hsa-miR-6865-5p 1 0 0
chr1:19327901|19328096 hsa-miR-1343-5p 1 0 0
chr1:19327901|19328096 hsa-miR-3180 1 0 0
chr1:19327901|19328096 hsa-miR-6726-5p 1 0 0
chr1:19327901|19328096 hsa-miR-6756-5p 1 0 0
chr1:19327901|19328096 hsa-miR-11181-3p 1 0 0
chr1:19327901|19328096 hsa-miR-1249-5p 1 0 0
chr1:19327901|19328096 hsa-miR-6722-3p 1 0 0
chr1:19327901|19328096 hsa-miR-6763-5p 0 1 0
chr1:19327901|19328096 hsa-miR-6779-5p 0 1 0
chr1:19327901|19328096 hsa-miR-6808-5p 1 0 0
chr1:19327901|19328096 hsa-miR-7111-5p 1 0 0
chr1:19327901|19328096 hsa-miR-4728-5p 1 0 0
chr1:19327901|19328096 hsa-miR-6836-5p 1 0 0
chr1:19327901|19328096 hsa-miR-10396b-5p 1 0 0
chr1:19327901|19328096 hsa-miR-1237-5p 1 0 0
chr1:19327901|19328096 hsa-miR-1909-3p 1 0 0
chr1:19327901|19328096 hsa-miR-328-5p 1 0 0
chr1:19327901|19328096 hsa-miR-4649-5p 1 0 0
chr1:19327901|19328096 hsa-miR-4726-5p 1 0 0
chr1:19327901|19328096 hsa-miR-6795-5p 1 0 0
chr1:19327901|19328096 hsa-miR-4723-5p 1 0 0
chr1:19327901|19328096 hsa-miR-34b-5p 0 1 0
chr1:19327901|19328096 hsa-miR-6856-5p 0 1 0
chr1:19327901|19328096 hsa-miR-4646-5p 1 0 0
chr1:19327901|19328096 hsa-miR-4667-5p 1 0 0
chr1:19327901|19328096 hsa-miR-3184-5p 1 0 0
chr1:19327901|19328096 hsa-miR-6762-5p 1 0 0
chr1:19327901|19328096 hsa-miR-449b-5p 0 1 0
chr1:19327901|19328096 hsa-miR-6500-5p 1 0 0
chr1:19327901|19328096 hsa-miR-34c-5p 0 1 0
chr1:19327901|19328096 hsa-miR-2682-5p 0 1 0
chr1:19327901|19328096 hsa-miR-200a-5p 0 1 0
chr1:19327901|19328096 hsa-miR-195-5p 0 1 0
chr1:19327901|19328096 hsa-miR-181b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:19327901|19328096
ORF Type ORF1
Protein Length 61
Nucleotide Length 186
Protein Sequence MVRQTWVQILAPPLLPSCVTQGTQSTSLCCRVFTSVNSHCLVRMLCKMRYLETLPTGPRFQ
Nucleotide Sequence TTGGTCAGACAAACCTGGGTTCAAATCCTGGCTCCTCCCCTGCTTCCTAGCTGTGTGACGCAGGGCACACAGTCAACCTCTCTGTGCTGCCGTGTCTTCACCTCAGTTAACAGCCACTGTCTCGTCAGGATGTTGTGTAAGATGAGGTATCTGGAAACACTCCCCACAGGACCCCGTTTTCAGTGA
CircID chr1:19327901|19328096
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MKTGSCGECFQIPHLTQHPDETVAVN
Nucleotide Sequence CTGAAAACGGGGTCCTGTGGGGAGTGTTTCCAGATACCTCATCTTACACAACATCCTGACGAGACAGTGGCTGTTAACTGA
CircID chr1:19327901|19328096
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MCALRHTARKQGRSQDLNPGLSDQVM
Nucleotide Sequence CTGTGTGCCCTGCGTCACACAGCTAGGAAGCAGGGGAGGAGCCAGGATTTGAACCCAGGTTTGTCTGACCAAGTCATG
CircID chr1:19327901|19328096
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MTRQWLLTEVKTRQHREVDCVPCVTQLGSRGGARI
Nucleotide Sequence CTGACGAGACAGTGGCTGTTAACTGAGGTGAAGACACGGCAGCACAGAGAGGTTGACTGTGTGCCCTGCGTCACACAGCTAGGAAGCAGGGGAGGAGCCAGGATTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab