CircRNA Information

General Information
circRNA Basic Information
CircID chr1:19657974|19658146
Strand +
CircType exon
Host Gene ENSG00000270136.4;
Algorism CIRI2;
Sequence CCTGACTGTCCACGCAAGTCCCATGTCCTCCTCGTCCTGGAGTTCCTCGAGGTTCAGCGAGCCCATCCCGCCTAGGGCCTCTGGAACCTTGGGGCGAGGGAGGTAACCCCTCACTCCCACACCCATCCGATATTTACAAAGAGCATCCCTGGGAGAGGGGAGAAGGCGGCCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:19657974|19658146 hsa-miR-150-5p 0 0 1
chr1:19657974|19658146 hsa-miR-150-3p 0 0 1
chr1:19657974|19658146 hsa-miR-609 0 0 1
chr1:19657974|19658146 hsa-miR-611 0 0 1
chr1:19657974|19658146 hsa-miR-665 0 0 1
chr1:19657974|19658146 hsa-miR-532-3p 0 0 1
chr1:19657974|19658146 hsa-miR-423-5p 0 0 1
chr1:19657974|19658146 hsa-miR-525-5p 0 0 1
chr1:19657974|19658146 hsa-miR-508-5p 0 0 1
chr1:19657974|19658146 hsa-miR-409-5p 0 0 1
chr1:19657974|19658146 hsa-miR-520a-5p 0 0 1
chr1:19657974|19658146 hsa-miR-151-5p 0 0 1
chr1:19657974|19658146 hsa-miR-720 0 0 1
chr1:19657974|19658146 hsa-miR-1268a 1 0 0
chr1:19657974|19658146 hsa-miR-3138 0 1 0
chr1:19657974|19658146 hsa-miR-3183 0 1 0
chr1:19657974|19658146 hsa-miR-3661 1 0 0
chr1:19657974|19658146 hsa-miR-1268b 1 0 0
chr1:19657974|19658146 hsa-miR-4440 1 0 0
chr1:19657974|19658146 hsa-miR-4674 0 1 0
chr1:19657974|19658146 hsa-miR-8052 1 0 0
chr1:19657974|19658146 hsa-miR-6892-3p 0 1 0
chr1:19657974|19658146 hsa-miR-6089 1 0 0
chr1:19657974|19658146 hsa-miR-6741-5p 1 0 0
chr1:19657974|19658146 hsa-miR-3622b-5p 1 0 0
chr1:19657974|19658146 hsa-miR-6871-5p 1 0 0
chr1:19657974|19658146 hsa-miR-877-3p 1 0 0
chr1:19657974|19658146 hsa-miR-6782-5p 1 0 0
chr1:19657974|19658146 hsa-miR-5008-5p 0 1 0
chr1:19657974|19658146 hsa-miR-6882-3p 1 1 0
chr1:19657974|19658146 hsa-miR-6740-3p 0 1 0
chr1:19657974|19658146 hsa-miR-1908-3p 1 1 0
chr1:19657974|19658146 hsa-miR-6814-5p 0 1 0
chr1:19657974|19658146 hsa-miR-6826-3p 0 1 0
chr1:19657974|19658146 hsa-miR-7113-5p 0 1 0
chr1:19657974|19658146 hsa-miR-6880-3p 1 1 0
chr1:19657974|19658146 hsa-miR-5004-5p 0 1 0
chr1:19657974|19658146 hsa-miR-3675-5p 0 1 0
chr1:19657974|19658146 hsa-miR-4763-3p 1 0 0
chr1:19657974|19658146 hsa-miR-6769b-5p 0 1 0
chr1:19657974|19658146 hsa-miR-6756-5p 1 1 0
chr1:19657974|19658146 hsa-miR-6803-5p 0 1 0
chr1:19657974|19658146 hsa-miR-10401-5p 0 1 0
chr1:19657974|19658146 hsa-miR-6751-5p 0 1 0
chr1:19657974|19658146 hsa-miR-6875-5p 1 1 0
chr1:19657974|19658146 hsa-miR-4685-5p 1 0 0
chr1:19657974|19658146 hsa-miR-939-5p 1 0 0
chr1:19657974|19658146 hsa-miR-365a-5p 1 1 0
chr1:19657974|19658146 hsa-miR-365b-5p 1 1 0
chr1:19657974|19658146 hsa-miR-342-5p 0 1 0
chr1:19657974|19658146 hsa-miR-10400-3p 0 1 0
chr1:19657974|19658146 hsa-miR-6837-5p 0 1 0
chr1:19657974|19658146 hsa-miR-3150b-5p 0 1 0
chr1:19657974|19658146 hsa-miR-3150a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:19657974|19658146
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence LTVHASPMSSSSWSSSRFSEPIPPRASGTLGRGR
Nucleotide Sequence CTGACTGTCCACGCAAGTCCCATGTCCTCCTCGTCCTGGAGTTCCTCGAGGTTCAGCGAGCCCATCCCGCCTAGGGCCTCTGGAACCTTGGGGCGAGGGAGGTAA
CircID chr1:19657974|19658146
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MSTQVPCPPRPGVPRGSASPSRLGPLEPWGEGGNPSLPHPSDIYKEHPWERGEGGR
Nucleotide Sequence CTGTCCACGCAAGTCCCATGTCCTCCTCGTCCTGGAGTTCCTCGAGGTTCAGCGAGCCCATCCCGCCTAGGGCCTCTGGAACCTTGGGGCGAGGGAGGTAACCCCTCACTCCCACACCCATCCGATATTTACAAAGAGCATCCCTGGGAGAGGGGAGAAGGCGGCCGG
CircID chr1:19657974|19658146
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MGVGVRGYLPRPKVPEALGGMGSLNLEELQDEEDMGLAWTVR
Nucleotide Sequence ATGGGTGTGGGAGTGAGGGGTTACCTCCCTCGCCCCAAGGTTCCAGAGGCCCTAGGCGGGATGGGCTCGCTGAACCTCGAGGAACTCCAGGACGAGGAGGACATGGGACTTGCGTGGACAGTCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab