CircRNA Information

General Information
circRNA Basic Information
CircID chr1:201461484|201461678
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CATGGTTCACCGAAGTGATCTGTCCAGAATTCAATTCATTCTTCTGCTAAAACTGCCAGCGCTTTCCCCACTGCATTGGGAGGATGCCCACTTGTCAAAAGGGTCTTCTCTCCACTATCAGGGCTATCTCTCCAGTGTTTGTCTCTACGTGCTCCACGCCCGGCCCCAGCATGCAATCCACCCCCATTCCAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:201461484|201461678 hsa-miR-34a-5p 0 0 1
chr1:201461484|201461678 hsa-miR-34a-3p 0 0 1
chr1:201461484|201461678 hsa-miR-141-5p 0 0 1
chr1:201461484|201461678 hsa-miR-141-3p 0 0 1
chr1:201461484|201461678 hsa-miR-150-5p 0 0 1
chr1:201461484|201461678 hsa-miR-150-3p 0 0 1
chr1:201461484|201461678 hsa-miR-185-5p 0 0 1
chr1:201461484|201461678 hsa-miR-185-3p 0 0 1
chr1:201461484|201461678 hsa-miR-206 0 0 1
chr1:201461484|201461678 hsa-miR-200a-5p 0 0 1
chr1:201461484|201461678 hsa-miR-200a-3p 0 0 1
chr1:201461484|201461678 hsa-miR-422a 0 0 1
chr1:201461484|201461678 hsa-miR-449a 0 0 1
chr1:201461484|201461678 hsa-miR-518f-5p 0 0 1
chr1:201461484|201461678 hsa-miR-518f-3p 0 0 1
chr1:201461484|201461678 hsa-miR-518b 0 0 1
chr1:201461484|201461678 hsa-miR-518c-5p 0 0 1
chr1:201461484|201461678 hsa-miR-518c-3p 0 0 1
chr1:201461484|201461678 hsa-miR-518e-5p 0 0 1
chr1:201461484|201461678 hsa-miR-518e-3p 0 0 1
chr1:201461484|201461678 hsa-miR-608 1 0 1
chr1:201461484|201461678 hsa-miR-613 0 0 1
chr1:201461484|201461678 hsa-miR-449b-5p 0 0 1
chr1:201461484|201461678 hsa-miR-449b-3p 0 0 1
chr1:201461484|201461678 hsa-miR-298 0 1 1
chr1:201461484|201461678 hsa-miR-1299 0 0 1
chr1:201461484|201461678 hsa-miR-1253 0 0 1
chr1:201461484|201461678 hsa-miR-1277-5p 0 0 1
chr1:201461484|201461678 hsa-miR-1277-3p 0 0 1
chr1:201461484|201461678 hsa-miR-491-5p 1 0 1
chr1:201461484|201461678 hsa-miR-34c-5p 0 0 1
chr1:201461484|201461678 hsa-miR-518a-3p 0 0 1
chr1:201461484|201461678 hsa-miR-518d-3p 0 0 1
chr1:201461484|201461678 hsa-miR-378 0 0 1
chr1:201461484|201461678 hsa-miR-1268 0 0 1
chr1:201461484|201461678 hsa-miR-1 0 0 1
chr1:201461484|201461678 hsa-miR-219-2-3p 0 0 1
chr1:201461484|201461678 hsa-miR-514 0 0 1
chr1:201461484|201461678 hsa-miR-516b 0 0 1
chr1:201461484|201461678 hsa-miR-129-3p 0 0 1
chr1:201461484|201461678 hsa-miR-612 1 0 0
chr1:201461484|201461678 hsa-miR-658 1 0 0
chr1:201461484|201461678 hsa-miR-762 1 0 0
chr1:201461484|201461678 hsa-miR-1268a 1 0 0
chr1:201461484|201461678 hsa-miR-1275 1 0 0
chr1:201461484|201461678 hsa-miR-2110 1 1 0
chr1:201461484|201461678 hsa-miR-2861 1 0 0
chr1:201461484|201461678 hsa-miR-3153 1 1 0
chr1:201461484|201461678 hsa-miR-3175 1 0 0
chr1:201461484|201461678 hsa-miR-4306 0 1 0
chr1:201461484|201461678 hsa-miR-3651 0 1 0
chr1:201461484|201461678 hsa-miR-1268b 1 1 0
chr1:201461484|201461678 hsa-miR-4440 1 0 0
chr1:201461484|201461678 hsa-miR-4468 1 1 0
chr1:201461484|201461678 hsa-miR-4487 1 0 0
chr1:201461484|201461678 hsa-miR-4488 1 0 0
chr1:201461484|201461678 hsa-miR-4492 1 0 0
chr1:201461484|201461678 hsa-miR-4498 1 0 0
chr1:201461484|201461678 hsa-miR-4505 1 0 0
chr1:201461484|201461678 hsa-miR-2392 1 0 0
chr1:201461484|201461678 hsa-miR-4507 1 0 0
chr1:201461484|201461678 hsa-miR-4508 1 0 0
chr1:201461484|201461678 hsa-miR-4525 1 0 0
chr1:201461484|201461678 hsa-miR-1587 1 0 0
chr1:201461484|201461678 hsa-miR-4651 1 0 0
chr1:201461484|201461678 hsa-miR-4706 1 0 0
chr1:201461484|201461678 hsa-miR-5192 1 0 0
chr1:201461484|201461678 hsa-miR-5572 1 0 0
chr1:201461484|201461678 hsa-miR-5787 1 0 0
chr1:201461484|201461678 hsa-miR-6085 1 0 0
chr1:201461484|201461678 hsa-miR-6125 1 0 0
chr1:201461484|201461678 hsa-miR-6860 1 1 0
chr1:201461484|201461678 hsa-miR-7704 1 0 0
chr1:201461484|201461678 hsa-miR-8056 0 1 0
chr1:201461484|201461678 hsa-miR-8072 1 0 0
chr1:201461484|201461678 hsa-miR-8085 1 0 0
chr1:201461484|201461678 hsa-miR-8089 1 0 0
chr1:201461484|201461678 hsa-miR-12115 1 1 0
chr1:201461484|201461678 hsa-miR-370-3p 1 0 0
chr1:201461484|201461678 hsa-miR-4433b-3p 1 0 0
chr1:201461484|201461678 hsa-miR-92a-2-5p 1 0 0
chr1:201461484|201461678 hsa-miR-128-1-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4731-5p 1 0 0
chr1:201461484|201461678 hsa-miR-504-3p 1 0 0
chr1:201461484|201461678 hsa-miR-6747-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4433a-3p 1 0 0
chr1:201461484|201461678 hsa-miR-671-5p 1 0 0
chr1:201461484|201461678 hsa-miR-3150a-3p 0 1 0
chr1:201461484|201461678 hsa-miR-6857-5p 1 0 0
chr1:201461484|201461678 hsa-miR-219a-1-3p 1 1 0
chr1:201461484|201461678 hsa-miR-6728-5p 1 0 0
chr1:201461484|201461678 hsa-miR-7851-3p 1 0 0
chr1:201461484|201461678 hsa-miR-5187-5p 1 0 0
chr1:201461484|201461678 hsa-miR-1227-5p 1 1 0
chr1:201461484|201461678 hsa-miR-6089 1 0 0
chr1:201461484|201461678 hsa-miR-6757-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6880-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6890-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6741-5p 1 0 0
chr1:201461484|201461678 hsa-miR-3622b-5p 1 0 0
chr1:201461484|201461678 hsa-miR-197-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6742-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6716-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6871-5p 1 0 0
chr1:201461484|201461678 hsa-miR-3180-3p 1 0 0
chr1:201461484|201461678 hsa-miR-6793-5p 1 1 0
chr1:201461484|201461678 hsa-miR-6732-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6760-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6782-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6514-5p 1 0 0
chr1:201461484|201461678 hsa-miR-3667-5p 0 1 0
chr1:201461484|201461678 hsa-miR-6821-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6810-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6786-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6835-5p 1 0 0
chr1:201461484|201461678 hsa-miR-7109-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4783-3p 1 0 0
chr1:201461484|201461678 hsa-miR-4640-5p 1 0 0
chr1:201461484|201461678 hsa-miR-1908-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4690-5p 1 0 0
chr1:201461484|201461678 hsa-miR-92b-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6749-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4743-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4787-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4446-3p 1 0 0
chr1:201461484|201461678 hsa-miR-17-5p 1 0 0
chr1:201461484|201461678 hsa-miR-106a-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6781-5p 1 1 0
chr1:201461484|201461678 hsa-miR-6877-5p 1 0 0
chr1:201461484|201461678 hsa-miR-194-3p 1 0 0
chr1:201461484|201461678 hsa-miR-4727-3p 1 1 0
chr1:201461484|201461678 hsa-miR-625-5p 1 0 0
chr1:201461484|201461678 hsa-miR-1296-3p 1 0 0
chr1:201461484|201461678 hsa-miR-219b-3p 0 1 0
chr1:201461484|201461678 hsa-miR-6769b-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6812-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6816-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6870-5p 1 0 0
chr1:201461484|201461678 hsa-miR-1343-5p 1 0 0
chr1:201461484|201461678 hsa-miR-5001-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6737-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6752-5p 1 1 0
chr1:201461484|201461678 hsa-miR-6756-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6803-5p 1 1 0
chr1:201461484|201461678 hsa-miR-6813-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6819-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6842-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6851-5p 1 0 0
chr1:201461484|201461678 hsa-miR-7110-5p 1 0 0
chr1:201461484|201461678 hsa-miR-10401-5p 1 0 0
chr1:201461484|201461678 hsa-miR-1249-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6751-5p 1 1 0
chr1:201461484|201461678 hsa-miR-6763-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6779-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6788-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6797-5p 1 1 0
chr1:201461484|201461678 hsa-miR-7111-5p 1 0 0
chr1:201461484|201461678 hsa-miR-3620-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4728-5p 1 0 0
chr1:201461484|201461678 hsa-miR-5196-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6780b-5p 1 1 0
chr1:201461484|201461678 hsa-miR-10396b-5p 1 0 0
chr1:201461484|201461678 hsa-miR-10526-3p 1 0 0
chr1:201461484|201461678 hsa-miR-1237-5p 1 0 0
chr1:201461484|201461678 hsa-miR-1909-3p 1 0 0
chr1:201461484|201461678 hsa-miR-4725-3p 1 0 0
chr1:201461484|201461678 hsa-miR-4745-5p 1 0 0
chr1:201461484|201461678 hsa-miR-675-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6846-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6848-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4758-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6511a-5p 1 0 0
chr1:201461484|201461678 hsa-miR-3940-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6731-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6856-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4665-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4646-5p 1 0 0
chr1:201461484|201461678 hsa-miR-4472 1 0 0
chr1:201461484|201461678 hsa-miR-4716-3p 1 0 0
chr1:201461484|201461678 hsa-miR-6849-5p 1 0 0
chr1:201461484|201461678 hsa-miR-302a-3p 0 1 0
chr1:201461484|201461678 hsa-miR-6724-5p 1 0 0
chr1:201461484|201461678 hsa-miR-6762-5p 1 0 0
chr1:201461484|201461678 hsa-miR-9851-5p 1 1 0
chr1:201461484|201461678 hsa-miR-363-5p 0 1 0
chr1:201461484|201461678 hsa-miR-128-2-5p 1 0 0
chr1:201461484|201461678 hsa-miR-106b-5p 1 1 0
chr1:201461484|201461678 hsa-miR-302b-3p 1 1 0
chr1:201461484|201461678 hsa-miR-526a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:201461484|201461678
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MGGCPLVKRVFSPLSGLSLQCLSLRAPRPAPACNPPPFQD
Nucleotide Sequence TTGGGAGGATGCCCACTTGTCAAAAGGGTCTTCTCTCCACTATCAGGGCTATCTCTCCAGTGTTTGTCTCTACGTGCTCCACGCCCGGCCCCAGCATGCAATCCACCCCCATTCCAGGAC
CircID chr1:201461484|201461678
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MVHRSDLSRIQFILLLKLPALSPLHWEDAHLSKGSSLHYQGYLSSVCLYVLHARPQHAIHPHSR
Nucleotide Sequence ATGGTTCACCGAAGTGATCTGTCCAGAATTCAATTCATTCTTCTGCTAAAACTGCCAGCGCTTTCCCCACTGCATTGGGAGGATGCCCACTTGTCAAAAGGGTCTTCTCTCCACTATCAGGGCTATCTCTCCAGTGTTTGTCTCTACGTGCTCCACGCCCGGCCCCAGCATGCAATCCACCCCCATTCCAGG
CircID chr1:201461484|201461678
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MPTCQKGLLSTIRAISPVFVSTCSTPGPSMQSTPIPG
Nucleotide Sequence ATGCCCACTTGTCAAAAGGGTCTTCTCTCCACTATCAGGGCTATCTCTCCAGTGTTTGTCTCTACGTGCTCCACGCCCGGCCCCAGCATGCAATCCACCCCCATTCCAGGA
CircID chr1:201461484|201461678
ORF Type ORF4
Protein Length 46
Nucleotide Length 141
Protein Sequence MHAGAGRGARRDKHWRDSPDSGEKTLLTSGHPPNAVGKALAVLAEE
Nucleotide Sequence TTGCATGCTGGGGCCGGGCGTGGAGCACGTAGAGACAAACACTGGAGAGATAGCCCTGATAGTGGAGAGAAGACCCTTTTGACAAGTGGGCATCCTCCCAATGCAGTGGGGAAAGCGCTGGCAGTTTTAGCAGAAGAATGA
CircID chr1:201461484|201461678
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MGVDCMLGPGVEHVETNTGEIALIVERRPF
Nucleotide Sequence ATGGGGGTGGATTGCATGCTGGGGCCGGGCGTGGAGCACGTAGAGACAAACACTGGAGAGATAGCCCTGATAGTGGAGAGAAGACCCTTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab