CircRNA Information

General Information
circRNA Basic Information
CircID chr1:201465569|201465785
Strand -
CircType exon
Host Gene ENSG00000174307.6;
Algorism CIRI2;
Sequence CCCCACCACCTTCAGGCCGAACACCGCAGTGGGGGGAAGATGCGTAGAGGTGGGGGAAGAAGTGTGCAAAGAAAGGGCCTGGATGGGTGGGGGTCCCAAAAGGACCTAAGCAGCAGGAGACCCCCAGGAGTGGGCTTTAGGCCCAGCAGCTCCCCCTTCTCAAGGTGAGTCCAGAGGCCATTCTGGAGTGGGCCTGGGTACCAGGCCCTGGGTACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:201465569|201465785 hsa-miR-370-5p 0 0 1
chr1:201465569|201465785 hsa-miR-370-3p 0 0 1
chr1:201465569|201465785 hsa-miR-422a 0 1 1
chr1:201465569|201465785 hsa-miR-493-5p 0 0 1
chr1:201465569|201465785 hsa-miR-493-3p 0 0 1
chr1:201465569|201465785 hsa-miR-507 0 0 1
chr1:201465569|201465785 hsa-miR-557 0 0 1
chr1:201465569|201465785 hsa-miR-558 0 1 1
chr1:201465569|201465785 hsa-miR-580-5p 0 0 1
chr1:201465569|201465785 hsa-miR-580-3p 0 0 1
chr1:201465569|201465785 hsa-miR-637 0 1 1
chr1:201465569|201465785 hsa-miR-541-5p 0 0 1
chr1:201465569|201465785 hsa-miR-541-3p 0 0 1
chr1:201465569|201465785 hsa-miR-920 0 1 1
chr1:201465569|201465785 hsa-miR-939-5p 0 0 1
chr1:201465569|201465785 hsa-miR-939-3p 0 0 1
chr1:201465569|201465785 hsa-miR-1234-3p 0 0 1
chr1:201465569|201465785 hsa-miR-1253 0 0 1
chr1:201465569|201465785 hsa-miR-1263 0 1 1
chr1:201465569|201465785 hsa-miR-1234 0 0 1
chr1:201465569|201465785 hsa-miR-654-5p 0 0 1
chr1:201465569|201465785 hsa-miR-508-5p 0 1 1
chr1:201465569|201465785 hsa-miR-361-3p 0 0 1
chr1:201465569|201465785 hsa-miR-1224-3p 1 1 1
chr1:201465569|201465785 hsa-miR-483-3p 0 0 1
chr1:201465569|201465785 hsa-miR-1302 0 0 1
chr1:201465569|201465785 hsa-miR-378 0 0 1
chr1:201465569|201465785 hsa-miR-1300 0 0 1
chr1:201465569|201465785 hsa-miR-326 1 0 0
chr1:201465569|201465785 hsa-miR-484 1 0 0
chr1:201465569|201465785 hsa-miR-640 1 0 0
chr1:201465569|201465785 hsa-miR-661 0 1 0
chr1:201465569|201465785 hsa-miR-764 1 0 0
chr1:201465569|201465785 hsa-miR-1260a 1 0 0
chr1:201465569|201465785 hsa-miR-1913 1 0 0
chr1:201465569|201465785 hsa-miR-2861 0 1 0
chr1:201465569|201465785 hsa-miR-3154 0 1 0
chr1:201465569|201465785 hsa-miR-378c 0 1 0
chr1:201465569|201465785 hsa-miR-4286 0 1 0
chr1:201465569|201465785 hsa-miR-378i 0 1 0
chr1:201465569|201465785 hsa-miR-5193 1 0 0
chr1:201465569|201465785 hsa-miR-5698 0 1 0
chr1:201465569|201465785 hsa-miR-7703 1 0 0
chr1:201465569|201465785 hsa-miR-141-5p 0 1 0
chr1:201465569|201465785 hsa-miR-6749-3p 1 0 0
chr1:201465569|201465785 hsa-miR-4747-3p 1 0 0
chr1:201465569|201465785 hsa-miR-1972 1 0 0
chr1:201465569|201465785 hsa-miR-6892-3p 1 0 0
chr1:201465569|201465785 hsa-miR-3189-5p 1 0 0
chr1:201465569|201465785 hsa-miR-6770-5p 0 1 0
chr1:201465569|201465785 hsa-miR-6728-3p 1 0 0
chr1:201465569|201465785 hsa-miR-5008-5p 1 0 0
chr1:201465569|201465785 hsa-miR-4713-5p 1 0 0
chr1:201465569|201465785 hsa-miR-532-3p 1 0 0
chr1:201465569|201465785 hsa-miR-4436b-5p 1 0 0
chr1:201465569|201465785 hsa-miR-6884-3p 1 0 0
chr1:201465569|201465785 hsa-miR-6852-5p 0 1 0
chr1:201465569|201465785 hsa-miR-6763-3p 1 0 0
chr1:201465569|201465785 hsa-miR-7108-3p 1 0 0
chr1:201465569|201465785 hsa-miR-1247-5p 1 0 0
chr1:201465569|201465785 hsa-miR-3679-3p 0 1 0
chr1:201465569|201465785 hsa-miR-6878-3p 0 1 0
chr1:201465569|201465785 hsa-miR-7160-3p 1 0 0
chr1:201465569|201465785 hsa-miR-1236-3p 1 0 0
chr1:201465569|201465785 hsa-miR-4758-3p 1 0 0
chr1:201465569|201465785 hsa-miR-4778-3p 0 1 0
chr1:201465569|201465785 hsa-miR-6886-3p 1 0 0
chr1:201465569|201465785 hsa-miR-6859-3p 0 1 0
chr1:201465569|201465785 hsa-miR-3675-3p 0 1 0
chr1:201465569|201465785 hsa-miR-1178-3p 1 0 0
chr1:201465569|201465785 hsa-miR-6851-3p 1 0 0
chr1:201465569|201465785 hsa-miR-4433a-5p 1 0 0
chr1:201465569|201465785 hsa-miR-4433b-5p 1 0 0
chr1:201465569|201465785 hsa-miR-1249-3p 1 0 0
chr1:201465569|201465785 hsa-miR-6729-3p 1 0 0
chr1:201465569|201465785 hsa-miR-6800-3p 1 0 0
chr1:201465569|201465785 hsa-miR-3162-3p 1 1 0
chr1:201465569|201465785 hsa-miR-6870-5p 0 1 0
chr1:201465569|201465785 hsa-miR-6726-5p 0 1 0
chr1:201465569|201465785 hsa-miR-7107-5p 0 1 0
chr1:201465569|201465785 hsa-miR-3127-3p 1 0 0
chr1:201465569|201465785 hsa-miR-4685-5p 0 1 0
chr1:201465569|201465785 hsa-miR-6794-5p 0 1 0
chr1:201465569|201465785 hsa-miR-4723-5p 0 1 0
chr1:201465569|201465785 hsa-miR-378a-3p 0 1 0
chr1:201465569|201465785 hsa-miR-6893-3p 1 0 0
chr1:201465569|201465785 hsa-miR-4757-5p 1 1 0
chr1:201465569|201465785 hsa-miR-6756-3p 1 0 0
chr1:201465569|201465785 hsa-miR-6792-3p 1 0 0
chr1:201465569|201465785 hsa-miR-6775-3p 1 0 0
chr1:201465569|201465785 hsa-miR-6744-3p 0 1 0
chr1:201465569|201465785 hsa-miR-6783-3p 1 1 0
chr1:201465569|201465785 hsa-miR-4691-5p 1 0 0
chr1:201465569|201465785 hsa-miR-6764-5p 0 1 0
chr1:201465569|201465785 hsa-miR-6811-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:201465569|201465785
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MRRGGGRSVQRKGLDGWGSQKDLSSRRPPGVGFRPSSSPFSR
Nucleotide Sequence ATGCGTAGAGGTGGGGGAAGAAGTGTGCAAAGAAAGGGCCTGGATGGGTGGGGGTCCCAAAAGGACCTAAGCAGCAGGAGACCCCCAGGAGTGGGCTTTAGGCCCAGCAGCTCCCCCTTCTCAAGGTGA
CircID chr1:201465569|201465785
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MGVSCCLGPFGTPTHPGPFFAHFFPHLYASSPHCGVRPEGGG
Nucleotide Sequence CTGGGGGTCTCCTGCTGCTTAGGTCCTTTTGGGACCCCCACCCATCCAGGCCCTTTCTTTGCACACTTCTTCCCCCACCTCTACGCATCTTCCCCCCACTGCGGTGTTCGGCCTGAAGGTGGTGGG
CircID chr1:201465569|201465785
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MGPPPIQALSLHTSSPTSTHLPPTAVFGLKVVG
Nucleotide Sequence TTGGGACCCCCACCCATCCAGGCCCTTTCTTTGCACACTTCTTCCCCCACCTCTACGCATCTTCCCCCCACTGCGGTGTTCGGCCTGAAGGTGGTGGGG
CircID chr1:201465569|201465785
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MLGLKPTPGGLLLLRSFWDPHPSRPFLCTLLPPPLRIFPPLRCSA
Nucleotide Sequence CTGCTGGGCCTAAAGCCCACTCCTGGGGGTCTCCTGCTGCTTAGGTCCTTTTGGGACCCCCACCCATCCAGGCCCTTTCTTTGCACACTTCTTCCCCCACCTCTACGCATCTTCCCCCCACTGCGGTGTTCGGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab