CircRNA Information

General Information
circRNA Basic Information
CircID chr1:202015325|202015540
Strand +
CircType exon
Host Gene ENSG00000163435.14;
Algorism CIRI2;
Sequence CCCAGGGCTTGTAATTCCAAGAGGAGGGTGGGGAGGCGAGGCCATAGTCTCCGAGTCCCAGGACGATGGCTGACAATACACCAAAACATCAGCTTCTCTCCACAGCACAGCTGGGAGCATTCCCCAGTGGAGGGGCCATCTGGCCTGCCTGTCCTCCCAGGAAGGTTTGCAGGCCTCGAGTGGTCCGTGAGTTTGGTCCCGGGTATAGTTCCAACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:202015325|202015540 hsa-miR-185-5p 0 0 1
chr1:202015325|202015540 hsa-miR-185-3p 0 0 1
chr1:202015325|202015540 hsa-miR-432-5p 0 0 1
chr1:202015325|202015540 hsa-miR-432-3p 0 0 1
chr1:202015325|202015540 hsa-miR-940 0 0 1
chr1:202015325|202015540 hsa-miR-1281 0 1 1
chr1:202015325|202015540 hsa-miR-941 0 0 1
chr1:202015325|202015540 hsa-miR-611 1 0 0
chr1:202015325|202015540 hsa-miR-637 1 0 0
chr1:202015325|202015540 hsa-miR-658 1 0 0
chr1:202015325|202015540 hsa-miR-2110 0 1 0
chr1:202015325|202015540 hsa-miR-3661 1 1 0
chr1:202015325|202015540 hsa-miR-4449 1 0 0
chr1:202015325|202015540 hsa-miR-4739 1 0 0
chr1:202015325|202015540 hsa-miR-8075 1 0 0
chr1:202015325|202015540 hsa-miR-8089 1 0 0
chr1:202015325|202015540 hsa-miR-138-5p 1 0 0
chr1:202015325|202015540 hsa-miR-7114-5p 0 1 0
chr1:202015325|202015540 hsa-miR-3192-5p 0 1 0
chr1:202015325|202015540 hsa-miR-7154-3p 0 1 0
chr1:202015325|202015540 hsa-miR-3189-5p 1 0 0
chr1:202015325|202015540 hsa-miR-6874-5p 1 0 0
chr1:202015325|202015540 hsa-miR-1343-3p 1 1 0
chr1:202015325|202015540 hsa-miR-939-3p 1 0 0
chr1:202015325|202015540 hsa-miR-1226-5p 1 1 0
chr1:202015325|202015540 hsa-miR-4763-5p 1 0 0
chr1:202015325|202015540 hsa-miR-6803-3p 1 1 0
chr1:202015325|202015540 hsa-miR-6878-3p 0 1 0
chr1:202015325|202015540 hsa-miR-7112-5p 0 1 0
chr1:202015325|202015540 hsa-miR-6887-3p 0 1 0
chr1:202015325|202015540 hsa-miR-6778-3p 0 1 0
chr1:202015325|202015540 hsa-miR-5004-5p 0 1 0
chr1:202015325|202015540 hsa-miR-6734-3p 0 1 0
chr1:202015325|202015540 hsa-miR-1273h-5p 0 1 0
chr1:202015325|202015540 hsa-miR-6778-5p 1 1 0
chr1:202015325|202015540 hsa-miR-6893-5p 0 1 0
chr1:202015325|202015540 hsa-miR-1249-5p 1 0 0
chr1:202015325|202015540 hsa-miR-6780a-5p 0 1 0
chr1:202015325|202015540 hsa-miR-6808-5p 0 1 0
chr1:202015325|202015540 hsa-miR-6795-5p 0 1 0
chr1:202015325|202015540 hsa-miR-4700-5p 0 1 0
chr1:202015325|202015540 hsa-miR-3679-5p 0 1 0
chr1:202015325|202015540 hsa-miR-6791-5p 0 1 0
chr1:202015325|202015540 hsa-miR-10401-3p 1 1 0
chr1:202015325|202015540 hsa-miR-6884-5p 1 0 0
chr1:202015325|202015540 hsa-miR-6500-5p 1 0 0
chr1:202015325|202015540 hsa-miR-7157-3p 0 1 0
chr1:202015325|202015540 hsa-miR-5701 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:202015325|202015540
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MTIHQNISFSPQHSWEHSPVEGPSGLPVLPGRFAGLEWSVSLVPGIVPT
Nucleotide Sequence CTGACAATACACCAAAACATCAGCTTCTCTCCACAGCACAGCTGGGAGCATTCCCCAGTGGAGGGGCCATCTGGCCTGCCTGTCCTCCCAGGAAGGTTTGCAGGCCTCGAGTGGTCCGTGAGTTTGGTCCCGGGTATAGTTCCAACC
CircID chr1:202015325|202015540
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MADNTPKHQLLSTAQLGAFPSGGAIWPACPPRKVCRPRVVREFGPGYSSN
Nucleotide Sequence ATGGCTGACAATACACCAAAACATCAGCTTCTCTCCACAGCACAGCTGGGAGCATTCCCCAGTGGAGGGGCCATCTGGCCTGCCTGTCCTCCCAGGAAGGTTTGCAGGCCTCGAGTGGTCCGTGAGTTTGGTCCCGGGTATAGTTCCAAC
CircID chr1:202015325|202015540
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MLPAVLWREADVLVYCQPSSWDSETMASPPHPPLGITSPG
Nucleotide Sequence ATGCTCCCAGCTGTGCTGTGGAGAGAAGCTGATGTTTTGGTGTATTGTCAGCCATCGTCCTGGGACTCGGAGACTATGGCCTCGCCTCCCCACCCTCCTCTTGGAATTACAAGCCCTGGG
CircID chr1:202015325|202015540
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MCCGEKLMFWCIVSHRPGTRRLWPRLPTLLLELQAL
Nucleotide Sequence CTGTGCTGTGGAGAGAAGCTGATGTTTTGGTGTATTGTCAGCCATCGTCCTGGGACTCGGAGACTATGGCCTCGCCTCCCCACCCTCCTCTTGGAATTACAAGCCCTG
CircID chr1:202015325|202015540
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence LELYPGPNSRTTRGLQTFLGGQAGQMAPPLGNAPSCAVERS
Nucleotide Sequence TTGGAACTATACCCGGGACCAAACTCACGGACCACTCGAGGCCTGCAAACCTTCCTGGGAGGACAGGCAGGCCAGATGGCCCCTCCACTGGGGAATGCTCCCAGCTGTGCTGTGGAGAGAAGCTGA
CircID chr1:202015325|202015540
ORF Type ORF6
Protein Length 25
Nucleotide Length 75
Protein Sequence MSAIVLGLGDYGLASPPSSWNYKPW
Nucleotide Sequence TTGTCAGCCATCGTCCTGGGACTCGGAGACTATGGCCTCGCCTCCCCACCCTCCTCTTGGAATTACAAGCCCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab