CircRNA Information

General Information
circRNA Basic Information
CircID chr1:202300889|202303308
Strand +
CircType exon
Host Gene ENSG00000133067.16;
Algorism CIRI2;
Sequence TCCTGGATGTCCATGGCACCATTCAGAGATAGTGTGTGGAGTTTAGGCAGGTACTGGAATGCCGATCTTCCCACAAACTGGATTGGGTTATCATAAAAGTGTCTGGAAGAAGAAGGTCCAAACACCTAATTGGGTTTTTCAGGCCTTTCTGCTGGGATTAAGGCCAATCTCTGCTTTCTTCTCCTATCAATGTAGACCCAGGAAAGAACATGCAGGGAAAGGCAACCCCTCCCATACTTCTGCCTCCCTGGTGCTTCCTAGGGAAGTCCCTCCTGCCTTCCCATCCTCTGTCCTCCTCCCTGAAACACTGTTCGGCATTAAGAGACCAGAGAAAGTAGTACTCACATCGTCTGTAGCAGAGGGTTCCCCATGAAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:202300889|202303308 hsa-miR-29a-5p 0 0 1
chr1:202300889|202303308 hsa-miR-29a-3p 0 0 1
chr1:202300889|202303308 hsa-miR-205-5p 0 0 1
chr1:202300889|202303308 hsa-miR-205-3p 0 0 1
chr1:202300889|202303308 hsa-miR-221-5p 0 0 1
chr1:202300889|202303308 hsa-miR-221-3p 0 0 1
chr1:202300889|202303308 hsa-miR-222-5p 0 0 1
chr1:202300889|202303308 hsa-miR-222-3p 0 0 1
chr1:202300889|202303308 hsa-miR-155-5p 0 0 1
chr1:202300889|202303308 hsa-miR-155-3p 0 0 1
chr1:202300889|202303308 hsa-miR-29c-5p 0 0 1
chr1:202300889|202303308 hsa-miR-29c-3p 0 0 1
chr1:202300889|202303308 hsa-miR-326 0 0 1
chr1:202300889|202303308 hsa-miR-492 0 0 1
chr1:202300889|202303308 hsa-miR-603 0 0 1
chr1:202300889|202303308 hsa-miR-617 0 1 1
chr1:202300889|202303308 hsa-miR-650 0 0 1
chr1:202300889|202303308 hsa-miR-765 0 1 1
chr1:202300889|202303308 hsa-miR-298 1 1 1
chr1:202300889|202303308 hsa-miR-665 0 0 1
chr1:202300889|202303308 hsa-miR-922 0 0 1
chr1:202300889|202303308 hsa-miR-940 0 0 1
chr1:202300889|202303308 hsa-miR-1248 0 1 1
chr1:202300889|202303308 hsa-miR-1253 0 0 1
chr1:202300889|202303308 hsa-miR-1321 0 1 1
chr1:202300889|202303308 hsa-miR-1827 0 0 1
chr1:202300889|202303308 hsa-miR-145-5p 0 0 1
chr1:202300889|202303308 hsa-miR-770-5p 0 0 1
chr1:202300889|202303308 hsa-miR-193a-5p 0 0 1
chr1:202300889|202303308 hsa-miR-525-5p 0 0 1
chr1:202300889|202303308 hsa-miR-520a-5p 0 0 1
chr1:202300889|202303308 hsa-miR-330-5p 0 0 1
chr1:202300889|202303308 hsa-miR-548d-3p 0 0 1
chr1:202300889|202303308 hsa-miR-1274a 0 0 1
chr1:202300889|202303308 hsa-miR-1308 0 0 1
chr1:202300889|202303308 hsa-miR-29b 0 0 1
chr1:202300889|202303308 hsa-miR-365 0 0 1
chr1:202300889|202303308 hsa-miR-661 1 0 0
chr1:202300889|202303308 hsa-miR-2110 0 1 0
chr1:202300889|202303308 hsa-miR-3138 1 0 0
chr1:202300889|202303308 hsa-miR-3196 1 0 0
chr1:202300889|202303308 hsa-miR-4298 1 0 0
chr1:202300889|202303308 hsa-miR-4307 0 1 0
chr1:202300889|202303308 hsa-miR-4270 1 1 0
chr1:202300889|202303308 hsa-miR-3714 0 1 0
chr1:202300889|202303308 hsa-miR-4434 0 1 0
chr1:202300889|202303308 hsa-miR-4441 1 1 0
chr1:202300889|202303308 hsa-miR-4467 1 0 0
chr1:202300889|202303308 hsa-miR-2392 0 1 0
chr1:202300889|202303308 hsa-miR-4510 0 1 0
chr1:202300889|202303308 hsa-miR-4530 0 1 0
chr1:202300889|202303308 hsa-miR-4656 1 0 0
chr1:202300889|202303308 hsa-miR-4706 1 0 0
chr1:202300889|202303308 hsa-miR-4739 1 1 0
chr1:202300889|202303308 hsa-miR-5090 1 0 0
chr1:202300889|202303308 hsa-miR-5186 0 1 0
chr1:202300889|202303308 hsa-miR-6086 1 0 0
chr1:202300889|202303308 hsa-miR-6133 1 0 0
chr1:202300889|202303308 hsa-miR-6165 1 0 0
chr1:202300889|202303308 hsa-miR-12128 1 1 0
chr1:202300889|202303308 hsa-miR-211-3p 1 0 0
chr1:202300889|202303308 hsa-miR-153-5p 0 1 0
chr1:202300889|202303308 hsa-miR-6734-5p 1 0 0
chr1:202300889|202303308 hsa-miR-629-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6747-3p 1 1 0
chr1:202300889|202303308 hsa-miR-4433a-3p 1 0 0
chr1:202300889|202303308 hsa-miR-6765-5p 1 0 0
chr1:202300889|202303308 hsa-miR-671-5p 1 0 0
chr1:202300889|202303308 hsa-miR-3150a-3p 1 0 0
chr1:202300889|202303308 hsa-miR-7106-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6825-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6894-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6799-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6728-5p 1 0 0
chr1:202300889|202303308 hsa-miR-7851-3p 1 0 0
chr1:202300889|202303308 hsa-miR-6089 1 0 0
chr1:202300889|202303308 hsa-miR-6757-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6880-5p 1 0 0
chr1:202300889|202303308 hsa-miR-7847-3p 1 0 0
chr1:202300889|202303308 hsa-miR-4695-5p 1 0 0
chr1:202300889|202303308 hsa-miR-4722-5p 1 1 0
chr1:202300889|202303308 hsa-miR-7154-3p 1 1 0
chr1:202300889|202303308 hsa-miR-593-5p 1 0 0
chr1:202300889|202303308 hsa-miR-4655-5p 1 1 0
chr1:202300889|202303308 hsa-miR-3663-5p 0 1 0
chr1:202300889|202303308 hsa-miR-3605-5p 1 1 0
chr1:202300889|202303308 hsa-miR-491-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6871-5p 0 1 0
chr1:202300889|202303308 hsa-miR-3151-5p 1 0 0
chr1:202300889|202303308 hsa-miR-4711-5p 1 0 0
chr1:202300889|202303308 hsa-miR-3180-3p 1 0 0
chr1:202300889|202303308 hsa-miR-6748-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6827-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6798-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6760-5p 1 0 0
chr1:202300889|202303308 hsa-miR-30b-3p 0 1 0
chr1:202300889|202303308 hsa-miR-7109-5p 1 0 0
chr1:202300889|202303308 hsa-miR-204-3p 1 1 0
chr1:202300889|202303308 hsa-miR-4640-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6753-5p 1 1 0
chr1:202300889|202303308 hsa-miR-4756-3p 0 1 0
chr1:202300889|202303308 hsa-miR-149-3p 1 1 0
chr1:202300889|202303308 hsa-miR-6824-5p 1 0 0
chr1:202300889|202303308 hsa-miR-3162-5p 1 1 0
chr1:202300889|202303308 hsa-miR-3189-3p 1 0 0
chr1:202300889|202303308 hsa-miR-7112-5p 1 0 0
chr1:202300889|202303308 hsa-miR-887-5p 1 0 0
chr1:202300889|202303308 hsa-miR-3180-5p 0 1 0
chr1:202300889|202303308 hsa-miR-7113-5p 1 1 0
chr1:202300889|202303308 hsa-miR-5004-5p 0 1 0
chr1:202300889|202303308 hsa-miR-490-5p 0 1 0
chr1:202300889|202303308 hsa-miR-3173-5p 0 1 0
chr1:202300889|202303308 hsa-miR-4423-5p 0 1 0
chr1:202300889|202303308 hsa-miR-1207-5p 1 0 0
chr1:202300889|202303308 hsa-miR-4763-3p 1 0 0
chr1:202300889|202303308 hsa-miR-6778-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6870-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6893-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6743-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6754-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6756-5p 1 0 0
chr1:202300889|202303308 hsa-miR-10401-5p 1 0 0
chr1:202300889|202303308 hsa-miR-11181-3p 0 1 0
chr1:202300889|202303308 hsa-miR-1249-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6779-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6780a-5p 0 1 0
chr1:202300889|202303308 hsa-miR-6797-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6808-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6879-5p 1 0 0
chr1:202300889|202303308 hsa-miR-7111-5p 1 0 0
chr1:202300889|202303308 hsa-miR-4728-5p 1 0 0
chr1:202300889|202303308 hsa-miR-5196-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6780b-5p 1 1 0
chr1:202300889|202303308 hsa-miR-328-5p 1 1 0
chr1:202300889|202303308 hsa-miR-4632-5p 1 0 0
chr1:202300889|202303308 hsa-miR-4685-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6777-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6794-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6795-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6846-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6848-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6858-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6883-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6887-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6889-5p 1 0 0
chr1:202300889|202303308 hsa-miR-6831-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6885-5p 1 0 0
chr1:202300889|202303308 hsa-miR-939-5p 1 0 0
chr1:202300889|202303308 hsa-miR-1910-3p 0 1 0
chr1:202300889|202303308 hsa-miR-365a-5p 1 1 0
chr1:202300889|202303308 hsa-miR-365b-5p 0 1 0
chr1:202300889|202303308 hsa-miR-6511a-5p 1 1 0
chr1:202300889|202303308 hsa-miR-3085-5p 0 1 0
chr1:202300889|202303308 hsa-miR-7843-5p 1 0 0
chr1:202300889|202303308 hsa-miR-3679-5p 1 1 0
chr1:202300889|202303308 hsa-miR-4747-5p 0 1 0
chr1:202300889|202303308 hsa-miR-6785-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6791-5p 1 0 0
chr1:202300889|202303308 hsa-miR-9851-3p 1 0 0
chr1:202300889|202303308 hsa-miR-4756-5p 1 1 0
chr1:202300889|202303308 hsa-miR-6848-3p 0 1 0
chr1:202300889|202303308 hsa-miR-5195-3p 0 1 0
chr1:202300889|202303308 hsa-miR-6824-3p 0 1 0
chr1:202300889|202303308 hsa-miR-4659b-3p 0 1 0
chr1:202300889|202303308 hsa-miR-6764-3p 0 1 0
chr1:202300889|202303308 hsa-miR-876-5p 0 1 0
chr1:202300889|202303308 hsa-miR-4712-5p 0 1 0
chr1:202300889|202303308 hsa-miR-4659a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:202300889|202303308
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MSMAPFRDSVWSLGRYWNADLPTNWIGLS
Nucleotide Sequence ATGTCCATGGCACCATTCAGAGATAGTGTGTGGAGTTTAGGCAGGTACTGGAATGCCGATCTTCCCACAAACTGGATTGGGTTATCATAA
CircID chr1:202300889|202303308
ORF Type ORF2
Protein Length 104
Nucleotide Length 315
Protein Sequence MPIFPQTGLGYHKSVWKKKVQTPNWVFQAFLLGLRPISAFFSYQCRPRKEHAGKGNPSHTSASLVLPREVPPAFPSSVLLPETLFGIKRPEKVVLTSSVAEGSP
Nucleotide Sequence ATGCCGATCTTCCCACAAACTGGATTGGGTTATCATAAAAGTGTCTGGAAGAAGAAGGTCCAAACACCTAATTGGGTTTTTCAGGCCTTTCTGCTGGGATTAAGGCCAATCTCTGCTTTCTTCTCCTATCAATGTAGACCCAGGAAAGAACATGCAGGGAAAGGCAACCCCTCCCATACTTCTGCCTCCCTGGTGCTTCCTAGGGAAGTCCCTCCTGCCTTCCCATCCTCTGTCCTCCTCCCTGAAACACTGTTCGGCATTAAGAGACCAGAGAAAGTAGTACTCACATCGTCTGTAGCAGAGGGTTCCCCATGA
CircID chr1:202300889|202303308
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MECRSSHKLDWVIIKVSGRRRSKHLIGFFRPFCWD
Nucleotide Sequence CTGGAATGCCGATCTTCCCACAAACTGGATTGGGTTATCATAAAAGTGTCTGGAAGAAGAAGGTCCAAACACCTAATTGGGTTTTTCAGGCCTTTCTGCTGGGATTAA
CircID chr1:202300889|202303308
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MLSSPINVDPGKNMQGKATPPILLPPWCFLGKSLLPSHPLSSSLKHCSALRDQRK
Nucleotide Sequence CTGCTTTCTTCTCCTATCAATGTAGACCCAGGAAAGAACATGCAGGGAAAGGCAACCCCTCCCATACTTCTGCCTCCCTGGTGCTTCCTAGGGAAGTCCCTCCTGCCTTCCCATCCTCTGTCCTCCTCCCTGAAACACTGTTCGGCATTAAGAGACCAGAGAAAGTAG
CircID chr1:202300889|202303308
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MHVLSWVYIDRRRKQRLALIPAERPEKPN
Nucleotide Sequence CTGCATGTTCTTTCCTGGGTCTACATTGATAGGAGAAGAAAGCAGAGATTGGCCTTAATCCCAGCAGAAAGGCCTGAAAAACCCAATTAG
CircID chr1:202300889|202303308
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MGGVAFPCMFFPGSTLIGEESRDWP
Nucleotide Sequence ATGGGAGGGGTTGCCTTTCCCTGCATGTTCTTTCCTGGGTCTACATTGATAGGAGAAGAAAGCAGAGATTGGCCTTAA
CircID chr1:202300889|202303308
ORF Type ORF7
Protein Length 39
Nucleotide Length 120
Protein Sequence MKNPIRCLDLLLPDTFMITQSSLWEDRHSSTCLNSTHYL
Nucleotide Sequence CTGAAAAACCCAATTAGGTGTTTGGACCTTCTTCTTCCAGACACTTTTATGATAACCCAATCCAGTTTGTGGGAAGATCGGCATTCCAGTACCTGCCTAAACTCCACACACTATCTCTGA
CircID chr1:202300889|202303308
ORF Type ORF8
Protein Length 43
Nucleotide Length 132
Protein Sequence MPNSVSGRRTEDGKAGGTSLGSTREAEVWEGLPFPACSFLGLH
Nucleotide Sequence ATGCCGAACAGTGTTTCAGGGAGGAGGACAGAGGATGGGAAGGCAGGAGGGACTTCCCTAGGAAGCACCAGGGAGGCAGAAGTATGGGAGGGGTTGCCTTTCCCTGCATGTTCTTTCCTGGGTCTACATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab