CircRNA Information

General Information
circRNA Basic Information
CircID chr1:202882175|202882310
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCTGGGCTCAAGCAATCCTCTTACCTCAGCCCCATGAGTGGCTGGGACTACAGGTGTGCACTACCACAGCCTGCTAATTTTTGTGTTTTTTGTAGAGATGGGGGTCTCACTATGTTGCCTAGGCTGGTCTTGAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:202882175|202882310 hsa-let-7b-5p 0 0 1
chr1:202882175|202882310 hsa-let-7b-3p 0 0 1
chr1:202882175|202882310 hsa-let-7c-5p 0 0 1
chr1:202882175|202882310 hsa-let-7c-3p 0 0 1
chr1:202882175|202882310 hsa-let-7d-5p 0 0 1
chr1:202882175|202882310 hsa-let-7d-3p 0 0 1
chr1:202882175|202882310 hsa-let-7e-5p 0 0 1
chr1:202882175|202882310 hsa-let-7e-3p 0 0 1
chr1:202882175|202882310 hsa-miR-98-5p 0 0 1
chr1:202882175|202882310 hsa-miR-98-3p 0 0 1
chr1:202882175|202882310 hsa-let-7g-5p 0 0 1
chr1:202882175|202882310 hsa-let-7g-3p 0 0 1
chr1:202882175|202882310 hsa-let-7i-5p 0 0 1
chr1:202882175|202882310 hsa-let-7i-3p 0 0 1
chr1:202882175|202882310 hsa-miR-130a-5p 0 0 1
chr1:202882175|202882310 hsa-miR-130a-3p 0 0 1
chr1:202882175|202882310 hsa-miR-301a-5p 0 0 1
chr1:202882175|202882310 hsa-miR-301a-3p 0 0 1
chr1:202882175|202882310 hsa-miR-130b-5p 0 0 1
chr1:202882175|202882310 hsa-miR-130b-3p 0 0 1
chr1:202882175|202882310 hsa-miR-202-5p 0 0 1
chr1:202882175|202882310 hsa-miR-202-3p 0 0 1
chr1:202882175|202882310 hsa-miR-454-5p 0 0 1
chr1:202882175|202882310 hsa-miR-454-3p 0 0 1
chr1:202882175|202882310 hsa-miR-665 0 0 1
chr1:202882175|202882310 hsa-miR-301b-5p 0 0 1
chr1:202882175|202882310 hsa-miR-301b-3p 0 0 1
chr1:202882175|202882310 hsa-miR-921 0 0 1
chr1:202882175|202882310 hsa-miR-1228-5p 0 0 1
chr1:202882175|202882310 hsa-miR-1228-3p 0 0 1
chr1:202882175|202882310 hsa-miR-1225-3p 0 0 1
chr1:202882175|202882310 hsa-miR-769-5p 0 0 1
chr1:202882175|202882310 hsa-miR-1283 0 0 1
chr1:202882175|202882310 hsa-miR-1233 0 0 1
chr1:202882175|202882310 hsa-miR-1308 0 0 1
chr1:202882175|202882310 hsa-let-7a 0 0 1
chr1:202882175|202882310 hsa-let-7f 0 0 1
chr1:202882175|202882310 hsa-miR-762 1 0 0
chr1:202882175|202882310 hsa-miR-3125 1 0 0
chr1:202882175|202882310 hsa-miR-3135a 1 0 0
chr1:202882175|202882310 hsa-miR-4440 1 0 0
chr1:202882175|202882310 hsa-miR-4647 1 0 0
chr1:202882175|202882310 hsa-miR-4656 1 1 0
chr1:202882175|202882310 hsa-miR-4739 1 0 0
chr1:202882175|202882310 hsa-miR-4741 1 0 0
chr1:202882175|202882310 hsa-miR-6075 1 0 0
chr1:202882175|202882310 hsa-miR-6085 1 0 0
chr1:202882175|202882310 hsa-miR-7974 1 1 0
chr1:202882175|202882310 hsa-miR-7977 0 1 0
chr1:202882175|202882310 hsa-miR-8078 1 0 0
chr1:202882175|202882310 hsa-miR-7155-5p 1 0 0
chr1:202882175|202882310 hsa-miR-6894-5p 1 0 0
chr1:202882175|202882310 hsa-miR-6857-5p 1 0 0
chr1:202882175|202882310 hsa-miR-6880-5p 1 0 0
chr1:202882175|202882310 hsa-miR-3064-5p 1 0 0
chr1:202882175|202882310 hsa-miR-7160-5p 1 1 0
chr1:202882175|202882310 hsa-miR-3189-5p 1 0 0
chr1:202882175|202882310 hsa-miR-3194-5p 1 0 0
chr1:202882175|202882310 hsa-miR-7855-5p 1 1 0
chr1:202882175|202882310 hsa-miR-4690-5p 1 0 0
chr1:202882175|202882310 hsa-miR-3922-5p 1 0 0
chr1:202882175|202882310 hsa-miR-4671-3p 0 1 0
chr1:202882175|202882310 hsa-miR-6859-3p 0 1 0
chr1:202882175|202882310 hsa-miR-20b-3p 0 1 0
chr1:202882175|202882310 hsa-miR-3675-5p 0 1 0
chr1:202882175|202882310 hsa-miR-6756-5p 1 0 0
chr1:202882175|202882310 hsa-miR-6803-5p 1 0 0
chr1:202882175|202882310 hsa-miR-6813-5p 1 0 0
chr1:202882175|202882310 hsa-miR-6819-5p 1 0 0
chr1:202882175|202882310 hsa-miR-6722-3p 1 0 0
chr1:202882175|202882310 hsa-miR-6751-5p 1 0 0
chr1:202882175|202882310 hsa-miR-6848-5p 1 0 0
chr1:202882175|202882310 hsa-miR-1285-3p 1 1 0
chr1:202882175|202882310 hsa-miR-6855-5p 1 0 0
chr1:202882175|202882310 hsa-miR-3679-5p 1 0 0
chr1:202882175|202882310 hsa-miR-6859-5p 1 0 0
chr1:202882175|202882310 hsa-miR-3619-5p 1 1 0
chr1:202882175|202882310 hsa-miR-374b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:202882175|202882310
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MSGWDYRCALPQPANFCVFCRDGGLTMLPRLVL
Nucleotide Sequence ATGAGTGGCTGGGACTACAGGTGTGCACTACCACAGCCTGCTAATTTTTGTGTTTTTTGTAGAGATGGGGGTCTCACTATGTTGCCTAGGCTGGTCTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab