CircRNA Information

General Information
circRNA Basic Information
CircID chr1:203347569|203347778
Strand +
CircType exon
Host Gene ENSG00000122176.10;
Algorism CIRI2;
Sequence AACAACCTGACCCGGATGCCCGGTCCCCTGCCTCGATCCCTGAGAGAGCTCCATCTCGACCACAACCAGATCTCACGGGTCCCCAACAATGCTCTGGAGGGGCTGGAGAACCTCACGGCCTTGTACCTCCAACACAATGAGATCCAGGAAGTGGGCAGTTCCATGAGGGGCCTCCGGTCACTGATCTTGCTGGACCTGAGTTATAACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:203347569|203347778 hsa-miR-510-5p 0 0 1
chr1:203347569|203347778 hsa-miR-510-3p 0 0 1
chr1:203347569|203347778 hsa-miR-624-5p 0 0 1
chr1:203347569|203347778 hsa-miR-624-3p 0 0 1
chr1:203347569|203347778 hsa-miR-638 1 1 1
chr1:203347569|203347778 hsa-miR-766-5p 0 0 1
chr1:203347569|203347778 hsa-miR-766-3p 0 0 1
chr1:203347569|203347778 hsa-miR-940 0 1 1
chr1:203347569|203347778 hsa-miR-1294 0 1 1
chr1:203347569|203347778 hsa-miR-1266-5p 0 0 1
chr1:203347569|203347778 hsa-miR-1266-3p 0 0 1
chr1:203347569|203347778 hsa-miR-1827 0 1 1
chr1:203347569|203347778 hsa-miR-525-5p 0 0 1
chr1:203347569|203347778 hsa-miR-490-5p 0 0 1
chr1:203347569|203347778 hsa-miR-338-3p 0 0 1
chr1:203347569|203347778 hsa-miR-1207-5p 1 1 1
chr1:203347569|203347778 hsa-miR-520a-5p 0 0 1
chr1:203347569|203347778 hsa-miR-515-5p 0 0 1
chr1:203347569|203347778 hsa-miR-453 0 0 1
chr1:203347569|203347778 hsa-miR-768-5p 0 0 1
chr1:203347569|203347778 hsa-miR-637 1 0 0
chr1:203347569|203347778 hsa-miR-663a 1 0 0
chr1:203347569|203347778 hsa-miR-762 1 0 0
chr1:203347569|203347778 hsa-miR-3195 1 0 0
chr1:203347569|203347778 hsa-miR-4270 1 0 0
chr1:203347569|203347778 hsa-miR-4488 1 0 0
chr1:203347569|203347778 hsa-miR-4518 0 1 0
chr1:203347569|203347778 hsa-miR-3972 1 0 0
chr1:203347569|203347778 hsa-miR-4741 1 0 0
chr1:203347569|203347778 hsa-miR-6088 1 0 0
chr1:203347569|203347778 hsa-miR-6090 1 0 0
chr1:203347569|203347778 hsa-miR-7974 0 1 0
chr1:203347569|203347778 hsa-miR-8082 0 1 0
chr1:203347569|203347778 hsa-miR-8089 1 0 0
chr1:203347569|203347778 hsa-miR-9986 0 1 0
chr1:203347569|203347778 hsa-miR-12115 1 0 0
chr1:203347569|203347778 hsa-miR-12128 0 1 0
chr1:203347569|203347778 hsa-miR-6720-5p 0 1 0
chr1:203347569|203347778 hsa-miR-6854-5p 1 0 0
chr1:203347569|203347778 hsa-miR-6089 1 0 0
chr1:203347569|203347778 hsa-miR-3677-5p 0 1 0
chr1:203347569|203347778 hsa-miR-6727-5p 1 1 0
chr1:203347569|203347778 hsa-miR-3622b-5p 1 0 0
chr1:203347569|203347778 hsa-miR-1292-5p 1 0 0
chr1:203347569|203347778 hsa-miR-6793-5p 1 0 0
chr1:203347569|203347778 hsa-miR-4697-3p 1 0 0
chr1:203347569|203347778 hsa-miR-6798-5p 1 0 0
chr1:203347569|203347778 hsa-miR-6782-5p 1 0 0
chr1:203347569|203347778 hsa-miR-3156-5p 1 1 0
chr1:203347569|203347778 hsa-miR-6810-5p 0 1 0
chr1:203347569|203347778 hsa-miR-5008-5p 0 1 0
chr1:203347569|203347778 hsa-miR-6824-5p 1 0 0
chr1:203347569|203347778 hsa-miR-3922-5p 1 1 0
chr1:203347569|203347778 hsa-miR-597-3p 0 1 0
chr1:203347569|203347778 hsa-miR-4749-3p 0 1 0
chr1:203347569|203347778 hsa-miR-3675-5p 0 1 0
chr1:203347569|203347778 hsa-miR-3144-5p 1 1 0
chr1:203347569|203347778 hsa-miR-10400-5p 1 0 0
chr1:203347569|203347778 hsa-miR-4763-3p 1 1 0
chr1:203347569|203347778 hsa-miR-6816-5p 1 0 0
chr1:203347569|203347778 hsa-miR-6775-5p 1 0 0
chr1:203347569|203347778 hsa-miR-1343-5p 1 0 0
chr1:203347569|203347778 hsa-miR-6743-5p 1 0 0
chr1:203347569|203347778 hsa-miR-6722-3p 1 1 0
chr1:203347569|203347778 hsa-miR-6808-5p 1 1 0
chr1:203347569|203347778 hsa-miR-5196-5p 1 0 0
chr1:203347569|203347778 hsa-miR-10396b-5p 1 0 0
chr1:203347569|203347778 hsa-miR-1909-3p 1 1 0
chr1:203347569|203347778 hsa-miR-6794-5p 1 0 0
chr1:203347569|203347778 hsa-miR-939-5p 1 0 0
chr1:203347569|203347778 hsa-miR-4665-5p 1 0 0
chr1:203347569|203347778 hsa-miR-6724-5p 1 0 0
chr1:203347569|203347778 hsa-miR-6512-3p 0 1 0
chr1:203347569|203347778 hsa-miR-487b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:203347569|203347778
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence MTRMPGPLPRSLRELHLDHNQISRVPNNALEGLENLTALYLQHNEIQEVGSSMRGLRSLILLDLSYNH
Nucleotide Sequence CTGACCCGGATGCCCGGTCCCCTGCCTCGATCCCTGAGAGAGCTCCATCTCGACCACAACCAGATCTCACGGGTCCCCAACAATGCTCTGGAGGGGCTGGAGAACCTCACGGCCTTGTACCTCCAACACAATGAGATCCAGGAAGTGGGCAGTTCCATGAGGGGCCTCCGGTCACTGATCTTGCTGGACCTGAGTTATAACCAC
CircID chr1:203347569|203347778
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MLWRGWRTSRPCTSNTMRSRKWAVP
Nucleotide Sequence ATGCTCTGGAGGGGCTGGAGAACCTCACGGCCTTGTACCTCCAACACAATGAGATCCAGGAAGTGGGCAGTTCCATGA
CircID chr1:203347569|203347778
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MELPTSWISLCWRYKAVRFSSPSRALLGTREIWLWSRWSSLRDRGRGPGIRVRL
Nucleotide Sequence ATGGAACTGCCCACTTCCTGGATCTCATTGTGTTGGAGGTACAAGGCCGTGAGGTTCTCCAGCCCCTCCAGAGCATTGTTGGGGACCCGTGAGATCTGGTTGTGGTCGAGATGGAGCTCTCTCAGGGATCGAGGCAGGGGACCGGGCATCCGGGTCAGGTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab