CircRNA Information

General Information
circRNA Basic Information
CircID chr1:205100012|205100248
Strand -
CircType exon
Host Gene ENSG00000117222.12;
Algorism CIRI2;
Sequence CTGCCACGATGTATTCCCCATCCCCAGAGAAACAACATTTCTTCCATGGGGTCCTAAAGGACAAGGAAAGTACCAAGGAGAGCTGGAACTCAAGCCCAGGTCATGAATGATCACATATTCTTCTAGGTTGTGATACATACCTATTCACCAAATCCTGCAATTTCTGCATAGGTTCAGGCTCTCCATCTCTTCCACATGTTAAGATTTCTCTGCCATCATAAACTCTGATTATTCGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:205100012|205100248 hsa-miR-185-5p 0 0 1
chr1:205100012|205100248 hsa-miR-185-3p 0 0 1
chr1:205100012|205100248 hsa-miR-326 0 0 1
chr1:205100012|205100248 hsa-miR-433-5p 0 0 1
chr1:205100012|205100248 hsa-miR-433-3p 0 0 1
chr1:205100012|205100248 hsa-miR-539-5p 0 0 1
chr1:205100012|205100248 hsa-miR-539-3p 0 0 1
chr1:205100012|205100248 hsa-miR-631 0 0 1
chr1:205100012|205100248 hsa-miR-637 0 0 1
chr1:205100012|205100248 hsa-miR-651-5p 0 0 1
chr1:205100012|205100248 hsa-miR-651-3p 0 0 1
chr1:205100012|205100248 hsa-miR-298 0 0 1
chr1:205100012|205100248 hsa-miR-1204 0 0 1
chr1:205100012|205100248 hsa-miR-1286 0 0 1
chr1:205100012|205100248 hsa-miR-1263 0 0 1
chr1:205100012|205100248 hsa-miR-1272 0 0 1
chr1:205100012|205100248 hsa-miR-1322 0 0 1
chr1:205100012|205100248 hsa-miR-331-5p 0 0 1
chr1:205100012|205100248 hsa-miR-502-5p 0 0 1
chr1:205100012|205100248 hsa-miR-409-3p 0 0 1
chr1:205100012|205100248 hsa-miR-330-5p 0 0 1
chr1:205100012|205100248 hsa-miR-7 0 0 1
chr1:205100012|205100248 hsa-miR-578 0 1 0
chr1:205100012|205100248 hsa-miR-613 0 1 0
chr1:205100012|205100248 hsa-miR-765 1 0 0
chr1:205100012|205100248 hsa-miR-1183 1 0 0
chr1:205100012|205100248 hsa-miR-3661 0 1 0
chr1:205100012|205100248 hsa-miR-3911 1 0 0
chr1:205100012|205100248 hsa-miR-378g 0 1 0
chr1:205100012|205100248 hsa-miR-4450 1 0 0
chr1:205100012|205100248 hsa-miR-4651 1 0 0
chr1:205100012|205100248 hsa-miR-4657 1 1 0
chr1:205100012|205100248 hsa-miR-5739 1 0 0
chr1:205100012|205100248 hsa-miR-6077 0 1 0
chr1:205100012|205100248 hsa-miR-8089 1 1 0
chr1:205100012|205100248 hsa-miR-12113 0 1 0
chr1:205100012|205100248 hsa-miR-12128 1 0 0
chr1:205100012|205100248 hsa-miR-6747-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6857-5p 0 1 0
chr1:205100012|205100248 hsa-miR-6833-5p 1 1 0
chr1:205100012|205100248 hsa-miR-5187-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6757-5p 1 1 0
chr1:205100012|205100248 hsa-miR-6880-5p 1 0 0
chr1:205100012|205100248 hsa-miR-7847-3p 1 0 0
chr1:205100012|205100248 hsa-miR-197-5p 1 0 0
chr1:205100012|205100248 hsa-miR-3190-3p 0 1 0
chr1:205100012|205100248 hsa-miR-6782-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6810-5p 1 0 0
chr1:205100012|205100248 hsa-miR-939-3p 0 1 0
chr1:205100012|205100248 hsa-miR-6740-5p 1 0 0
chr1:205100012|205100248 hsa-miR-4756-3p 1 0 0
chr1:205100012|205100248 hsa-miR-877-5p 1 0 0
chr1:205100012|205100248 hsa-miR-3202 1 1 0
chr1:205100012|205100248 hsa-miR-4787-5p 1 0 0
chr1:205100012|205100248 hsa-miR-1180-3p 0 1 0
chr1:205100012|205100248 hsa-miR-4802-5p 0 1 0
chr1:205100012|205100248 hsa-miR-1207-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6778-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6865-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6752-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6756-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6803-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6722-3p 1 0 0
chr1:205100012|205100248 hsa-miR-6751-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6808-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6831-5p 1 0 0
chr1:205100012|205100248 hsa-miR-939-5p 1 0 0
chr1:205100012|205100248 hsa-miR-30c-1-3p 0 1 0
chr1:205100012|205100248 hsa-miR-4700-5p 1 1 0
chr1:205100012|205100248 hsa-miR-6849-5p 1 0 0
chr1:205100012|205100248 hsa-miR-6791-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:205100012|205100248
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MYSPSPEKQHFFHGVLKDKESTKESWNSSPGHE
Nucleotide Sequence ATGTATTCCCCATCCCCAGAGAAACAACATTTCTTCCATGGGGTCCTAAAGGACAAGGAAAGTACCAAGGAGAGCTGGAACTCAAGCCCAGGTCATGAATGA
CircID chr1:205100012|205100248
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MYHNLEEYVIIHDLGLSSSSPWYFPCPLGPHGRNVVSLGMGNTSWQ
Nucleotide Sequence ATGTATCACAACCTAGAAGAATATGTGATCATTCATGACCTGGGCTTGAGTTCCAGCTCTCCTTGGTACTTTCCTTGTCCTTTAGGACCCCATGGAAGAAATGTTGTTTCTCTGGGGATGGGGAATACATCGTGGCAG
CircID chr1:205100012|205100248
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MVLSLSFRTPWKKCCFSGDGEYIVA
Nucleotide Sequence TTGGTACTTTCCTTGTCCTTTAGGACCCCATGGAAGAAATGTTGTTTCTCTGGGGATGGGGAATACATCGTGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab