CircRNA Information

General Information
circRNA Basic Information
CircID chr1:205989177|205989339
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCCTGTCTGGCTGAACCCTGGCTTTTCCTAGAGTCACGCTTCCCCAGCGCCCCCTCTTGCCTTCCCCACTGGGGCTATTTGCAGACTTTACTCACCACAGATCCCAGAGAGGGGGCTGGCTTGCCTGGTGCCTCATTGCCTCTTTCAAACCTTTGTTCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:205989177|205989339 hsa-miR-31-5p 0 0 1
chr1:205989177|205989339 hsa-miR-31-3p 0 0 1
chr1:205989177|205989339 hsa-miR-326 0 0 1
chr1:205989177|205989339 hsa-miR-488-5p 0 0 1
chr1:205989177|205989339 hsa-miR-488-3p 0 0 1
chr1:205989177|205989339 hsa-miR-583 0 0 1
chr1:205989177|205989339 hsa-miR-638 1 0 1
chr1:205989177|205989339 hsa-miR-1324 0 0 1
chr1:205989177|205989339 hsa-miR-1827 0 0 1
chr1:205989177|205989339 hsa-miR-491-5p 0 0 1
chr1:205989177|205989339 hsa-miR-769-3p 1 1 1
chr1:205989177|205989339 hsa-miR-330-5p 0 1 1
chr1:205989177|205989339 hsa-miR-450b-3p 0 0 1
chr1:205989177|205989339 hsa-miR-650 1 0 0
chr1:205989177|205989339 hsa-miR-658 1 0 0
chr1:205989177|205989339 hsa-miR-2110 0 1 0
chr1:205989177|205989339 hsa-miR-3164 0 1 0
chr1:205989177|205989339 hsa-miR-3183 0 1 0
chr1:205989177|205989339 hsa-miR-3185 1 0 0
chr1:205989177|205989339 hsa-miR-4271 1 1 0
chr1:205989177|205989339 hsa-miR-4464 0 1 0
chr1:205989177|205989339 hsa-miR-4533 1 0 0
chr1:205989177|205989339 hsa-miR-3972 0 1 0
chr1:205989177|205989339 hsa-miR-4651 1 0 0
chr1:205989177|205989339 hsa-miR-4654 1 0 0
chr1:205989177|205989339 hsa-miR-4673 0 1 0
chr1:205989177|205989339 hsa-miR-4688 1 0 0
chr1:205989177|205989339 hsa-miR-4692 1 0 0
chr1:205989177|205989339 hsa-miR-4739 1 0 0
chr1:205989177|205989339 hsa-miR-4748 0 1 0
chr1:205989177|205989339 hsa-miR-5093 1 0 0
chr1:205989177|205989339 hsa-miR-5572 1 0 0
chr1:205989177|205989339 hsa-miR-6086 1 0 0
chr1:205989177|205989339 hsa-miR-6124 0 1 0
chr1:205989177|205989339 hsa-miR-6125 1 0 0
chr1:205989177|205989339 hsa-miR-8089 1 1 0
chr1:205989177|205989339 hsa-miR-134-5p 1 0 0
chr1:205989177|205989339 hsa-miR-7155-5p 1 0 0
chr1:205989177|205989339 hsa-miR-3157-5p 0 1 0
chr1:205989177|205989339 hsa-miR-7106-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6825-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6857-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6728-5p 1 0 0
chr1:205989177|205989339 hsa-miR-3192-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6880-5p 1 0 0
chr1:205989177|205989339 hsa-miR-4695-5p 1 1 0
chr1:205989177|205989339 hsa-miR-4709-3p 1 0 0
chr1:205989177|205989339 hsa-miR-4722-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6730-5p 1 0 0
chr1:205989177|205989339 hsa-miR-593-5p 0 1 0
chr1:205989177|205989339 hsa-miR-6741-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6805-5p 1 1 0
chr1:205989177|205989339 hsa-miR-2467-3p 1 0 0
chr1:205989177|205989339 hsa-miR-6810-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6858-3p 0 1 0
chr1:205989177|205989339 hsa-miR-6786-5p 1 0 0
chr1:205989177|205989339 hsa-miR-1229-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6771-5p 1 0 0
chr1:205989177|205989339 hsa-miR-4713-3p 1 0 0
chr1:205989177|205989339 hsa-miR-149-3p 1 0 0
chr1:205989177|205989339 hsa-miR-6824-5p 1 0 0
chr1:205989177|205989339 hsa-miR-1911-3p 0 1 0
chr1:205989177|205989339 hsa-miR-1207-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6769b-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6812-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6865-5p 1 0 0
chr1:205989177|205989339 hsa-miR-1343-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6726-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6743-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6752-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6756-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6769a-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6803-5p 1 0 0
chr1:205989177|205989339 hsa-miR-7110-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6722-3p 1 0 0
chr1:205989177|205989339 hsa-miR-6763-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6797-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6808-5p 1 0 0
chr1:205989177|205989339 hsa-miR-7111-5p 1 0 0
chr1:205989177|205989339 hsa-miR-4728-5p 1 0 0
chr1:205989177|205989339 hsa-miR-5196-5p 1 1 0
chr1:205989177|205989339 hsa-miR-6780b-5p 1 1 0
chr1:205989177|205989339 hsa-miR-10396a-5p 1 0 0
chr1:205989177|205989339 hsa-miR-1237-5p 1 1 0
chr1:205989177|205989339 hsa-miR-328-5p 1 0 0
chr1:205989177|205989339 hsa-miR-449c-5p 1 0 0
chr1:205989177|205989339 hsa-miR-4685-5p 1 0 0
chr1:205989177|205989339 hsa-miR-4725-3p 1 1 0
chr1:205989177|205989339 hsa-miR-4726-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6738-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6794-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6846-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6848-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6885-5p 1 1 0
chr1:205989177|205989339 hsa-miR-939-5p 1 1 0
chr1:205989177|205989339 hsa-miR-4665-5p 0 1 0
chr1:205989177|205989339 hsa-miR-4700-5p 0 1 0
chr1:205989177|205989339 hsa-miR-3173-3p 1 1 0
chr1:205989177|205989339 hsa-miR-6891-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6762-5p 1 0 0
chr1:205989177|205989339 hsa-miR-6837-5p 1 0 0
chr1:205989177|205989339 hsa-miR-9851-3p 0 1 0
chr1:205989177|205989339 hsa-miR-4723-3p 0 1 0
chr1:205989177|205989339 hsa-miR-6764-5p 1 1 0
chr1:205989177|205989339 hsa-miR-3059-3p 0 1 0
chr1:205989177|205989339 hsa-miR-4645-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:205989177|205989339
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MAFPRVTLPQRPLLPSPLGLFADFTHHRSQRGGWLAWCLIASFKPLFF
Nucleotide Sequence CTGGCTTTTCCTAGAGTCACGCTTCCCCAGCGCCCCCTCTTGCCTTCCCCACTGGGGCTATTTGCAGACTTTACTCACCACAGATCCCAGAGAGGGGGCTGGCTTGCCTGGTGCCTCATTGCCTCTTTCAAACCTTTGTTCTTC
CircID chr1:205989177|205989339
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MAEPWLFLESRFPSAPSCLPHWGYLQTLLTTDPREGAGLPGASLPLSNLCS
Nucleotide Sequence CTGGCTGAACCCTGGCTTTTCCTAGAGTCACGCTTCCCCAGCGCCCCCTCTTGCCTTCCCCACTGGGGCTATTTGCAGACTTTACTCACCACAGATCCCAGAGAGGGGGCTGGCTTGCCTGGTGCCTCATTGCCTCTTTCAAACCTTTGTTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab