CircRNA Information

General Information
circRNA Basic Information
CircID chr1:20650580|20650826
Strand -
CircType exon
Host Gene ENSG00000158828.5;
Algorism CIRI2;
Sequence AGAGAAGTGTTGTGTGGAAACAAAAATGAAGATGCTCTTTCTGGCTAACCTGGAGTGTGAAACGCTCTGCCAGGCAGCCCTCCTCCTCTGCTCATGGAGGGCAGCCCTGTGATGTCCCTGCATGGAGCTGGTGAATTACTAAAAGAACATGGCATCCTCTGTGTCGTGATGGTCTGTGAATGGTGAGGGTGGGAGTCAGGAGACAAGACAGCGCAGAGAGGGCTGGTTAGCCGGAAAAGGCCTCGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:20650580|20650826 hsa-miR-27a-5p 0 0 1
chr1:20650580|20650826 hsa-miR-27a-3p 0 0 1
chr1:20650580|20650826 hsa-miR-197-5p 0 0 1
chr1:20650580|20650826 hsa-miR-197-3p 0 0 1
chr1:20650580|20650826 hsa-miR-27b-5p 0 0 1
chr1:20650580|20650826 hsa-miR-27b-3p 0 0 1
chr1:20650580|20650826 hsa-miR-377-5p 0 0 1
chr1:20650580|20650826 hsa-miR-377-3p 0 0 1
chr1:20650580|20650826 hsa-miR-345-5p 0 0 1
chr1:20650580|20650826 hsa-miR-345-3p 0 0 1
chr1:20650580|20650826 hsa-miR-431-5p 0 0 1
chr1:20650580|20650826 hsa-miR-431-3p 0 0 1
chr1:20650580|20650826 hsa-miR-575 0 0 1
chr1:20650580|20650826 hsa-miR-579-5p 0 0 1
chr1:20650580|20650826 hsa-miR-579-3p 0 0 1
chr1:20650580|20650826 hsa-miR-626 0 0 1
chr1:20650580|20650826 hsa-miR-661 0 0 1
chr1:20650580|20650826 hsa-miR-765 0 0 1
chr1:20650580|20650826 hsa-miR-942-5p 0 0 1
chr1:20650580|20650826 hsa-miR-942-3p 0 0 1
chr1:20650580|20650826 hsa-miR-1180-5p 0 0 1
chr1:20650580|20650826 hsa-miR-1180-3p 0 0 1
chr1:20650580|20650826 hsa-miR-1226-5p 0 0 1
chr1:20650580|20650826 hsa-miR-1226-3p 0 0 1
chr1:20650580|20650826 hsa-miR-1276 0 0 1
chr1:20650580|20650826 hsa-miR-532-3p 0 0 1
chr1:20650580|20650826 hsa-miR-508-5p 0 0 1
chr1:20650580|20650826 hsa-miR-1224-3p 0 0 1
chr1:20650580|20650826 hsa-miR-513a-5p 0 0 1
chr1:20650580|20650826 hsa-miR-1260 0 0 1
chr1:20650580|20650826 hsa-miR-1280 0 0 1
chr1:20650580|20650826 hsa-miR-220c 0 0 1
chr1:20650580|20650826 hsa-miR-1254 0 0 1
chr1:20650580|20650826 hsa-miR-499-3p 0 0 1
chr1:20650580|20650826 hsa-miR-1200 1 0 0
chr1:20650580|20650826 hsa-miR-1260a 1 1 0
chr1:20650580|20650826 hsa-miR-3142 0 1 0
chr1:20650580|20650826 hsa-miR-1260b 1 1 0
chr1:20650580|20650826 hsa-miR-3183 0 1 0
chr1:20650580|20650826 hsa-miR-3188 0 1 0
chr1:20650580|20650826 hsa-miR-4462 1 1 0
chr1:20650580|20650826 hsa-miR-4468 0 1 0
chr1:20650580|20650826 hsa-miR-4656 1 0 0
chr1:20650580|20650826 hsa-miR-4706 1 0 0
chr1:20650580|20650826 hsa-miR-4721 0 1 0
chr1:20650580|20650826 hsa-miR-4741 1 0 0
chr1:20650580|20650826 hsa-miR-211-3p 0 1 0
chr1:20650580|20650826 hsa-miR-149-5p 1 1 0
chr1:20650580|20650826 hsa-miR-766-3p 1 0 0
chr1:20650580|20650826 hsa-miR-3692-3p 0 1 0
chr1:20650580|20650826 hsa-miR-6804-5p 1 0 0
chr1:20650580|20650826 hsa-miR-4677-5p 0 1 0
chr1:20650580|20650826 hsa-miR-6873-3p 0 1 0
chr1:20650580|20650826 hsa-miR-7845-5p 0 1 0
chr1:20650580|20650826 hsa-miR-6829-5p 0 1 0
chr1:20650580|20650826 hsa-miR-656-5p 0 1 0
chr1:20650580|20650826 hsa-miR-2467-3p 0 1 0
chr1:20650580|20650826 hsa-miR-6765-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6740-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6858-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6763-3p 1 0 0
chr1:20650580|20650826 hsa-miR-7108-3p 1 0 0
chr1:20650580|20650826 hsa-miR-4707-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6803-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6847-5p 0 1 0
chr1:20650580|20650826 hsa-miR-6818-3p 1 1 0
chr1:20650580|20650826 hsa-miR-4446-3p 0 1 0
chr1:20650580|20650826 hsa-miR-378a-5p 1 1 0
chr1:20650580|20650826 hsa-miR-4733-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6825-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6730-3p 1 0 0
chr1:20650580|20650826 hsa-miR-3180-5p 1 0 0
chr1:20650580|20650826 hsa-miR-3151-3p 1 0 0
chr1:20650580|20650826 hsa-miR-4649-3p 1 0 0
chr1:20650580|20650826 hsa-miR-7152-5p 1 0 0
chr1:20650580|20650826 hsa-miR-4433a-5p 1 0 0
chr1:20650580|20650826 hsa-miR-188-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6734-3p 1 0 0
chr1:20650580|20650826 hsa-miR-382-3p 1 1 0
chr1:20650580|20650826 hsa-miR-6502-3p 0 1 0
chr1:20650580|20650826 hsa-miR-1207-5p 1 0 0
chr1:20650580|20650826 hsa-miR-6775-5p 1 0 0
chr1:20650580|20650826 hsa-miR-5001-5p 1 0 0
chr1:20650580|20650826 hsa-miR-1909-3p 1 0 0
chr1:20650580|20650826 hsa-miR-4749-5p 1 1 0
chr1:20650580|20650826 hsa-miR-6858-5p 0 1 0
chr1:20650580|20650826 hsa-miR-10398-5p 1 0 0
chr1:20650580|20650826 hsa-miR-6511a-3p 0 1 0
chr1:20650580|20650826 hsa-miR-6862-3p 1 0 0
chr1:20650580|20650826 hsa-miR-10401-3p 1 0 0
chr1:20650580|20650826 hsa-miR-3622a-3p 1 0 0
chr1:20650580|20650826 hsa-miR-4723-3p 1 1 0
chr1:20650580|20650826 hsa-miR-6511b-3p 0 1 0
chr1:20650580|20650826 hsa-miR-6769b-3p 1 0 0
chr1:20650580|20650826 hsa-miR-5581-5p 0 1 0
chr1:20650580|20650826 hsa-miR-6876-3p 1 1 0
chr1:20650580|20650826 hsa-miR-5195-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6814-3p 1 0 0
chr1:20650580|20650826 hsa-miR-6820-3p 1 0 0
chr1:20650580|20650826 hsa-miR-499a-3p 0 1 0
chr1:20650580|20650826 hsa-miR-323a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:20650580|20650826
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MPGSPPPLLMEGSPVMSLHGAGELLKEHGILCVVMVCEW
Nucleotide Sequence CTGCCAGGCAGCCCTCCTCCTCTGCTCATGGAGGGCAGCCCTGTGATGTCCCTGCATGGAGCTGGTGAATTACTAAAAGAACATGGCATCCTCTGTGTCGTGATGGTCTGTGAATGGTGA

CircID chr1:20650580|20650826
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MKMLFLANLECETLCQAALLLCSWRAAL
Nucleotide Sequence ATGAAGATGCTCTTTCTGGCTAACCTGGAGTGTGAAACGCTCTGCCAGGCAGCCCTCCTCCTCTGCTCATGGAGGGCAGCCCTGTGA

CircID chr1:20650580|20650826
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MSCLLTPTLTIHRPSRHRGCHVLLVIHQLHAGTSQGCPP
Nucleotide Sequence CTGTCTTGTCTCCTGACTCCCACCCTCACCATTCACAGACCATCACGACACAGAGGATGCCATGTTCTTTTAGTAATTCACCAGCTCCATGCAGGGACATCACAGGGCTGCCCTCCATGA

CircID chr1:20650580|20650826
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MQGHHRAALHEQRRRAAWQSVSHSRLARKSIFIFVSTQHFS
Nucleotide Sequence ATGCAGGGACATCACAGGGCTGCCCTCCATGAGCAGAGGAGGAGGGCTGCCTGGCAGAGCGTTTCACACTCCAGGTTAGCCAGAAAGAGCATCTTCATTTTTGTTTCCACACAACACTTCTCT

CircID chr1:20650580|20650826
ORF Type ORF5
Protein Length 53
Nucleotide Length 162
Protein Sequence MSPDSHPHHSQTITTQRMPCSFSNSPAPCRDITGLPSMSRGGGLPGRAFHTPG
Nucleotide Sequence TTGTCTCCTGACTCCCACCCTCACCATTCACAGACCATCACGACACAGAGGATGCCATGTTCTTTTAGTAATTCACCAGCTCCATGCAGGGACATCACAGGGCTGCCCTCCATGAGCAGAGGAGGAGGGCTGCCTGGCAGAGCGTTTCACACTCCAGGTTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites