CircRNA Information

General Information
circRNA Basic Information
CircID chr1:206586199|206586412
Strand +
CircType exon
Host Gene ENSG00000266094.5;
Algorism CIRI2;
Sequence CTCGAGCACAGCTTTCCACCCTTCTCAGCCTGTTATCTGCTGGGAAATTGGGGTATCTACCTCCCATGACTGGCAGAGCAGATAATGAGAGCCTGACTGGCCCAGGCCTACCCCTAAAGGACTTGGCCTCTGATGGCAGAAGGCAATTTGGACTTCCATCAGGCTGACCCAAGAGCACAAGCCCTGTGCGGCCAACAATTGAGACTCCTAAGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:206586199|206586412 hsa-let-7b-5p 0 0 1
chr1:206586199|206586412 hsa-let-7b-3p 0 0 1
chr1:206586199|206586412 hsa-let-7c-5p 0 0 1
chr1:206586199|206586412 hsa-let-7c-3p 0 0 1
chr1:206586199|206586412 hsa-let-7d-5p 0 0 1
chr1:206586199|206586412 hsa-let-7d-3p 0 0 1
chr1:206586199|206586412 hsa-let-7e-5p 0 0 1
chr1:206586199|206586412 hsa-let-7e-3p 0 0 1
chr1:206586199|206586412 hsa-miR-98-5p 0 0 1
chr1:206586199|206586412 hsa-miR-98-3p 0 0 1
chr1:206586199|206586412 hsa-let-7g-5p 0 0 1
chr1:206586199|206586412 hsa-let-7g-3p 0 0 1
chr1:206586199|206586412 hsa-let-7i-5p 0 0 1
chr1:206586199|206586412 hsa-let-7i-3p 0 0 1
chr1:206586199|206586412 hsa-miR-320a-5p 0 0 1
chr1:206586199|206586412 hsa-miR-320a-3p 0 0 1
chr1:206586199|206586412 hsa-miR-484 0 0 1
chr1:206586199|206586412 hsa-miR-635 0 0 1
chr1:206586199|206586412 hsa-miR-661 1 1 1
chr1:206586199|206586412 hsa-miR-922 0 1 1
chr1:206586199|206586412 hsa-miR-1237-5p 0 0 1
chr1:206586199|206586412 hsa-miR-1237-3p 0 0 1
chr1:206586199|206586412 hsa-miR-1253 0 0 1
chr1:206586199|206586412 hsa-miR-767-3p 0 0 1
chr1:206586199|206586412 hsa-miR-320b 0 0 1
chr1:206586199|206586412 hsa-miR-320c 0 0 1
chr1:206586199|206586412 hsa-miR-320d 0 0 1
chr1:206586199|206586412 hsa-miR-220c 0 0 1
chr1:206586199|206586412 hsa-miR-1308 0 0 1
chr1:206586199|206586412 hsa-let-7a 0 0 1
chr1:206586199|206586412 hsa-let-7f 0 0 1
chr1:206586199|206586412 hsa-miR-1300 0 0 1
chr1:206586199|206586412 hsa-miR-218 0 0 1
chr1:206586199|206586412 hsa-miR-1201 0 0 1
chr1:206586199|206586412 hsa-miR-608 1 1 0
chr1:206586199|206586412 hsa-miR-762 1 0 0
chr1:206586199|206586412 hsa-miR-3909 1 0 0
chr1:206586199|206586412 hsa-miR-3689c 0 1 0
chr1:206586199|206586412 hsa-miR-3978 0 1 0
chr1:206586199|206586412 hsa-miR-4651 1 0 0
chr1:206586199|206586412 hsa-miR-4686 0 1 0
chr1:206586199|206586412 hsa-miR-6745 0 1 0
chr1:206586199|206586412 hsa-miR-3194-3p 0 1 0
chr1:206586199|206586412 hsa-miR-6765-5p 1 0 0
chr1:206586199|206586412 hsa-miR-125b-1-3p 1 0 0
chr1:206586199|206586412 hsa-miR-6894-5p 1 0 0
chr1:206586199|206586412 hsa-miR-3692-5p 0 1 0
chr1:206586199|206586412 hsa-miR-6089 1 0 0
chr1:206586199|206586412 hsa-miR-6742-5p 1 0 0
chr1:206586199|206586412 hsa-miR-6871-5p 0 1 0
chr1:206586199|206586412 hsa-miR-6770-5p 0 1 0
chr1:206586199|206586412 hsa-miR-6782-5p 1 0 0
chr1:206586199|206586412 hsa-miR-30b-3p 0 1 0
chr1:206586199|206586412 hsa-miR-939-3p 1 1 0
chr1:206586199|206586412 hsa-miR-7109-5p 0 1 0
chr1:206586199|206586412 hsa-miR-6784-5p 1 0 0
chr1:206586199|206586412 hsa-miR-3127-5p 1 0 0
chr1:206586199|206586412 hsa-miR-296-3p 1 0 0
chr1:206586199|206586412 hsa-miR-6823-5p 1 0 0
chr1:206586199|206586412 hsa-miR-3202 0 1 0
chr1:206586199|206586412 hsa-miR-6824-5p 1 0 0
chr1:206586199|206586412 hsa-miR-6789-5p 1 0 0
chr1:206586199|206586412 hsa-miR-3158-3p 0 1 0
chr1:206586199|206586412 hsa-miR-6828-3p 0 1 0
chr1:206586199|206586412 hsa-miR-875-5p 0 1 0
chr1:206586199|206586412 hsa-miR-1273h-5p 0 1 0
chr1:206586199|206586412 hsa-miR-3689b-3p 0 1 0
chr1:206586199|206586412 hsa-miR-6778-5p 1 0 0
chr1:206586199|206586412 hsa-miR-6756-5p 1 0 0
chr1:206586199|206586412 hsa-miR-6803-5p 1 0 0
chr1:206586199|206586412 hsa-miR-6819-5p 1 0 0
chr1:206586199|206586412 hsa-miR-6722-3p 1 0 0
chr1:206586199|206586412 hsa-miR-6780a-5p 0 1 0
chr1:206586199|206586412 hsa-miR-5196-5p 1 0 0
chr1:206586199|206586412 hsa-miR-6780b-5p 1 0 0
chr1:206586199|206586412 hsa-miR-3689a-3p 0 1 0
chr1:206586199|206586412 hsa-miR-4685-5p 1 0 0
chr1:206586199|206586412 hsa-miR-4725-3p 1 0 0
chr1:206586199|206586412 hsa-miR-4726-5p 1 0 0
chr1:206586199|206586412 hsa-miR-6858-5p 1 0 0
chr1:206586199|206586412 hsa-miR-1914-3p 1 0 0
chr1:206586199|206586412 hsa-miR-6805-3p 1 0 0
chr1:206586199|206586412 hsa-miR-6884-5p 1 1 0
chr1:206586199|206586412 hsa-miR-6817-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:206586199|206586412
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MMAEGNLDFHQADPRAQALCGQQLRLLS
Nucleotide Sequence CTGATGGCAGAAGGCAATTTGGACTTCCATCAGGCTGACCCAAGAGCACAAGCCCTGTGCGGCCAACAATTGAGACTCCTAAGC
CircID chr1:206586199|206586412
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MLSAGKLGYLPPMTGRADNESLTGPGLPLKDLASDGRRQFGLPSG
Nucleotide Sequence CTGTTATCTGCTGGGAAATTGGGGTATCTACCTCCCATGACTGGCAGAGCAGATAATGAGAGCCTGACTGGCCCAGGCCTACCCCTAAAGGACTTGGCCTCTGATGGCAGAAGGCAATTTGGACTTCCATCAGGCTGA
CircID chr1:206586199|206586412
ORF Type ORF3
Protein Length 57
Nucleotide Length 171
Protein Sequence MGQPDGSPNCLLPSEAKSFRGRPGPVRLSLSALPVMGGRYPNFPADNRLRRVESCAR
Nucleotide Sequence TTGGGTCAGCCTGATGGAAGTCCAAATTGCCTTCTGCCATCAGAGGCCAAGTCCTTTAGGGGTAGGCCTGGGCCAGTCAGGCTCTCATTATCTGCTCTGCCAGTCATGGGAGGTAGATACCCCAATTTCCCAGCAGATAACAGGCTGAGAAGGGTGGAAAGCTGTGCTCGA
CircID chr1:206586199|206586412
ORF Type ORF4
Protein Length 57
Nucleotide Length 174
Protein Sequence MLAAQGLCSWVSLMEVQIAFCHQRPSPLGVGLGQSGSHYLLCQSWEVDTPISQQITG
Nucleotide Sequence TTGTTGGCCGCACAGGGCTTGTGCTCTTGGGTCAGCCTGATGGAAGTCCAAATTGCCTTCTGCCATCAGAGGCCAAGTCCTTTAGGGGTAGGCCTGGGCCAGTCAGGCTCTCATTATCTGCTCTGCCAGTCATGGGAGGTAGATACCCCAATTTCCCAGCAGATAACAGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab