CircRNA Information

General Information
circRNA Basic Information
CircID chr1:21290118|21290433
Strand +
CircType exon
Host Gene ENSG00000117298.13;
Algorism CIRI2;
Sequence CAGGCGTCTGGGGCACAGCATGCGGGGCGTGTGGCCGCCCCCGGTGTCCGCCCTGCTGTCGGCGCTGGGGGTGAGGCGGGCGCGGCCTGGAGGGCGGGGGCGGGAGGCGGGCGGGACCCCTCCCCGCGCGGGCCGCTCCGTGGGCCGGTCTCGGTCTCGGGTGTCCAGGCCGGGGCGGGGCGCGGCGGCGGCGGCGCCAGGGTCGGGGCCGCTTCCCCATTCGGGCGCGAGAGCCATGGAGGCGCTGAGGGAGTCCGTGCTGCATTTGGCCTTGCAGATGTCGACGTACAAGCGGGCCACGCTGGACGAGGAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:21290118|21290433 hsa-miR-107 0 0 1
chr1:21290118|21290433 hsa-miR-214-5p 0 0 1
chr1:21290118|21290433 hsa-miR-214-3p 0 0 1
chr1:21290118|21290433 hsa-miR-504-5p 0 0 1
chr1:21290118|21290433 hsa-miR-504-3p 0 0 1
chr1:21290118|21290433 hsa-miR-760 1 0 1
chr1:21290118|21290433 hsa-miR-1234-3p 0 0 1
chr1:21290118|21290433 hsa-miR-663b 0 0 1
chr1:21290118|21290433 hsa-miR-1204 0 0 1
chr1:21290118|21290433 hsa-miR-1281 0 0 1
chr1:21290118|21290433 hsa-miR-1234 0 0 1
chr1:21290118|21290433 hsa-miR-615-5p 0 0 1
chr1:21290118|21290433 hsa-miR-566 0 0 1
chr1:21290118|21290433 hsa-miR-361-3p 0 0 1
chr1:21290118|21290433 hsa-miR-105 0 0 1
chr1:21290118|21290433 hsa-miR-103 0 0 1
chr1:21290118|21290433 hsa-miR-1254 0 0 1
chr1:21290118|21290433 hsa-miR-1181 1 0 0
chr1:21290118|21290433 hsa-miR-1469 1 0 0
chr1:21290118|21290433 hsa-miR-1471 1 0 0
chr1:21290118|21290433 hsa-miR-9901 1 0 0
chr1:21290118|21290433 hsa-miR-323a-5p 1 0 0
chr1:21290118|21290433 hsa-miR-4665-3p 1 0 0
chr1:21290118|21290433 hsa-miR-6836-3p 1 0 0
chr1:21290118|21290433 hsa-miR-6763-3p 1 0 0
chr1:21290118|21290433 hsa-miR-1247-5p 1 0 0
chr1:21290118|21290433 hsa-miR-1908-3p 1 0 0
chr1:21290118|21290433 hsa-miR-6803-3p 1 0 0
chr1:21290118|21290433 hsa-miR-4638-3p 1 0 0
chr1:21290118|21290433 hsa-miR-3922-5p 1 0 0
chr1:21290118|21290433 hsa-miR-4707-5p 1 0 0
chr1:21290118|21290433 hsa-miR-6789-3p 1 0 0
chr1:21290118|21290433 hsa-miR-4787-3p 1 0 0
chr1:21290118|21290433 hsa-miR-1343-5p 1 0 0
chr1:21290118|21290433 hsa-miR-4745-3p 1 0 0
chr1:21290118|21290433 hsa-miR-4745-5p 1 0 0
chr1:21290118|21290433 hsa-miR-6799-3p 1 0 0
chr1:21290118|21290433 hsa-miR-6791-3p 1 0 0
chr1:21290118|21290433 hsa-miR-6724-5p 1 0 0
chr1:21290118|21290433 hsa-miR-10398-5p 1 0 0
chr1:21290118|21290433 hsa-miR-10401-3p 1 0 0
chr1:21290118|21290433 hsa-miR-6829-3p 1 0 0
chr1:21290118|21290433 hsa-miR-10392-3p 1 0 0
chr1:21290118|21290433 hsa-miR-33b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:21290118|21290433
ORF Type ORF1
Protein Length 103
Nucleotide Length 309
Protein Sequence MGHSMRGVWPPPVSALLSALGVRRARPGGRGREAGGTPPRAGRSVGRSRSRVSRPGRGAAAAAPGSGPLPHSGARAMEALRESVLHLALQMSTYKRATLDEED
Nucleotide Sequence CTGGGGCACAGCATGCGGGGCGTGTGGCCGCCCCCGGTGTCCGCCCTGCTGTCGGCGCTGGGGGTGAGGCGGGCGCGGCCTGGAGGGCGGGGGCGGGAGGCGGGCGGGACCCCTCCCCGCGCGGGCCGCTCCGTGGGCCGGTCTCGGTCTCGGGTGTCCAGGCCGGGGCGGGGCGCGGCGGCGGCGGCGCCAGGGTCGGGGCCGCTTCCCCATTCGGGCGCGAGAGCCATGGAGGCGCTGAGGGAGTCCGTGCTGCATTTGGCCTTGCAGATGTCGACGTACAAGCGGGCCACGCTGGACGAGGAGGAC
CircID chr1:21290118|21290433
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MEGGGGRRAGPLPARAAPWAGLGLGCPGRGGARRRRRQGRGRFPIRAREPWRR
Nucleotide Sequence CTGGAGGGCGGGGGCGGGAGGCGGGCGGGACCCCTCCCCGCGCGGGCCGCTCCGTGGGCCGGTCTCGGTCTCGGGTGTCCAGGCCGGGGCGGGGCGCGGCGGCGGCGGCGCCAGGGTCGGGGCCGCTTCCCCATTCGGGCGCGAGAGCCATGGAGGCGCTGA
CircID chr1:21290118|21290433
ORF Type ORF3
Protein Length 92
Nucleotide Length 276
Protein Sequence MQGQMQHGLPQRLHGSRARMGKRPRPWRRRRRAPPRPGHPRPRPAHGAARAGRGPARLPPPPSRPRPPHPQRRQQGGHRGRPHAPHAVPQTP
Nucleotide Sequence CTGCAAGGCCAAATGCAGCACGGACTCCCTCAGCGCCTCCATGGCTCTCGCGCCCGAATGGGGAAGCGGCCCCGACCCTGGCGCCGCCGCCGCCGCGCCCCGCCCCGGCCTGGACACCCGAGACCGAGACCGGCCCACGGAGCGGCCCGCGCGGGGAGGGGTCCCGCCCGCCTCCCGCCCCCGCCCTCCAGGCCGCGCCCGCCTCACCCCCAGCGCCGACAGCAGGGCGGACACCGGGGGCGGCCACACGCCCCGCATGCTGTGCCCCAGACGCCT
CircID chr1:21290118|21290433
ORF Type ORF4
Protein Length 97
Nucleotide Length 291
Protein Sequence MYVDICKAKCSTDSLSASMALAPEWGSGPDPGAAAAAPRPGLDTRDRDRPTERPARGGVPPASRPRPPGRARLTPSADSRADTGGGHTPRMLCPRRL
Nucleotide Sequence TTGTACGTCGACATCTGCAAGGCCAAATGCAGCACGGACTCCCTCAGCGCCTCCATGGCTCTCGCGCCCGAATGGGGAAGCGGCCCCGACCCTGGCGCCGCCGCCGCCGCGCCCCGCCCCGGCCTGGACACCCGAGACCGAGACCGGCCCACGGAGCGGCCCGCGCGGGGAGGGGTCCCGCCCGCCTCCCGCCCCCGCCCTCCAGGCCGCGCCCGCCTCACCCCCAGCGCCGACAGCAGGGCGGACACCGGGGGCGGCCACACGCCCCGCATGCTGTGCCCCAGACGCCTG
CircID chr1:21290118|21290433
ORF Type ORF5
Protein Length 66
Nucleotide Length 198
Protein Sequence MAPPPPRPAPAWTPETETGPRSGPRGEGSRPPPAPALQAAPASPPAPTAGRTPGAATRPACCAPDA
Nucleotide Sequence CTGGCGCCGCCGCCGCCGCGCCCCGCCCCGGCCTGGACACCCGAGACCGAGACCGGCCCACGGAGCGGCCCGCGCGGGGAGGGGTCCCGCCCGCCTCCCGCCCCCGCCCTCCAGGCCGCGCCCGCCTCACCCCCAGCGCCGACAGCAGGGCGGACACCGGGGGCGGCCACACGCCCCGCATGCTGTGCCCCAGACGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab