CircRNA Information

General Information
circRNA Basic Information
CircID chr1:21577905|21578088
Strand +
CircType exon
Host Gene ENSG00000162551.12;
Algorism CIRI2;
Sequence ATGAGCATTGTAGGGCCTGGGGGGTTCCAGAGGTAAGGAGATGGGAGTGGGAGGGTCAGGAGATGAGACTGGGAGGGTCAGATCCAGAATGTTCCACGGAGGCTTCAGGGCCTCTGGGTCTGGAGAAATACGTTCGCTAGAAAAATAAGAGGCTTTGAGAATGTCTGCAGTCTGTACTCTCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:21577905|21578088 hsa-miR-504-5p 0 0 1
chr1:21577905|21578088 hsa-miR-504-3p 0 0 1
chr1:21577905|21578088 hsa-miR-766-5p 0 0 1
chr1:21577905|21578088 hsa-miR-766-3p 0 0 1
chr1:21577905|21578088 hsa-miR-543 0 0 1
chr1:21577905|21578088 hsa-miR-1291 0 0 1
chr1:21577905|21578088 hsa-miR-1299 0 0 1
chr1:21577905|21578088 hsa-miR-513c-5p 0 0 1
chr1:21577905|21578088 hsa-miR-513c-3p 0 0 1
chr1:21577905|21578088 hsa-miR-532-3p 1 0 1
chr1:21577905|21578088 hsa-miR-330-3p 0 0 1
chr1:21577905|21578088 hsa-miR-361-3p 0 0 1
chr1:21577905|21578088 hsa-miR-875-3p 0 0 1
chr1:21577905|21578088 hsa-miR-509-3-5p 0 0 1
chr1:21577905|21578088 hsa-miR-509-5p 0 0 1
chr1:21577905|21578088 hsa-miR-515-5p 0 0 1
chr1:21577905|21578088 hsa-miR-371-5p 0 0 1
chr1:21577905|21578088 hsa-miR-516b 0 0 1
chr1:21577905|21578088 hsa-miR-1470 1 0 0
chr1:21577905|21578088 hsa-miR-3943 1 0 0
chr1:21577905|21578088 hsa-miR-6749-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6892-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6840-5p 1 0 0
chr1:21577905|21578088 hsa-miR-7110-3p 1 0 0
chr1:21577905|21578088 hsa-miR-1915-5p 1 0 0
chr1:21577905|21578088 hsa-miR-4725-5p 1 0 0
chr1:21577905|21578088 hsa-miR-877-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6765-3p 1 0 0
chr1:21577905|21578088 hsa-miR-4713-5p 1 0 0
chr1:21577905|21578088 hsa-miR-6884-3p 1 0 0
chr1:21577905|21578088 hsa-miR-939-3p 1 0 0
chr1:21577905|21578088 hsa-miR-3667-3p 1 0 0
chr1:21577905|21578088 hsa-miR-659-5p 1 0 0
chr1:21577905|21578088 hsa-miR-7111-3p 1 0 0
chr1:21577905|21578088 hsa-miR-4667-3p 1 0 0
chr1:21577905|21578088 hsa-miR-4646-3p 1 0 0
chr1:21577905|21578088 hsa-miR-345-5p 1 0 0
chr1:21577905|21578088 hsa-miR-4687-5p 1 0 0
chr1:21577905|21578088 hsa-miR-4732-3p 1 0 0
chr1:21577905|21578088 hsa-miR-584-3p 1 0 0
chr1:21577905|21578088 hsa-miR-3180-5p 1 0 0
chr1:21577905|21578088 hsa-miR-6887-3p 1 0 0
chr1:21577905|21578088 hsa-miR-1224-3p 1 0 0
chr1:21577905|21578088 hsa-miR-1180-5p 1 0 0
chr1:21577905|21578088 hsa-miR-6782-3p 1 0 0
chr1:21577905|21578088 hsa-miR-4749-3p 1 0 0
chr1:21577905|21578088 hsa-miR-328-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6777-3p 1 0 0
chr1:21577905|21578088 hsa-miR-4750-3p 1 0 0
chr1:21577905|21578088 hsa-miR-4433b-5p 1 0 0
chr1:21577905|21578088 hsa-miR-6734-3p 1 0 0
chr1:21577905|21578088 hsa-miR-2116-3p 1 0 0
chr1:21577905|21578088 hsa-miR-3156-3p 1 0 0
chr1:21577905|21578088 hsa-miR-10396a-3p 1 0 0
chr1:21577905|21578088 hsa-miR-10396b-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6877-3p 1 0 0
chr1:21577905|21578088 hsa-miR-324-3p 1 0 0
chr1:21577905|21578088 hsa-miR-193b-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6756-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6784-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6862-3p 1 0 0
chr1:21577905|21578088 hsa-miR-11181-5p 1 0 0
chr1:21577905|21578088 hsa-miR-3622a-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6751-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6819-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6891-3p 1 0 0
chr1:21577905|21578088 hsa-miR-7114-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6827-3p 1 0 0
chr1:21577905|21578088 hsa-miR-4769-3p 1 0 0
chr1:21577905|21578088 hsa-miR-6824-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:21577905|21578088
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MGGSRGKEMGVGGSGDETGRVRSRMFHGGFRASGSGEIRSLEK
Nucleotide Sequence CTGGGGGGTTCCAGAGGTAAGGAGATGGGAGTGGGAGGGTCAGGAGATGAGACTGGGAGGGTCAGATCCAGAATGTTCCACGGAGGCTTCAGGGCCTCTGGGTCTGGAGAAATACGTTCGCTAGAAAAATAA
CircID chr1:21577905|21578088
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MRLGGSDPECSTEASGPLGLEKYVR
Nucleotide Sequence ATGAGACTGGGAGGGTCAGATCCAGAATGTTCCACGGAGGCTTCAGGGCCTCTGGGTCTGGAGAAATACGTTCGCTAG
CircID chr1:21577905|21578088
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MKPPWNILDLTLPVSSPDPPTPISLPLEPPRPYNAH
Nucleotide Sequence CTGAAGCCTCCGTGGAACATTCTGGATCTGACCCTCCCAGTCTCATCTCCTGACCCTCCCACTCCCATCTCCTTACCTCTGGAACCCCCCAGGCCCTACAATGCTCAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab