CircRNA Information

General Information
circRNA Basic Information
CircID chr1:216650973|216707486
Strand -
CircType exon
Host Gene ENSG00000196482.16;
Algorism find_circ;CIRI2;DCC;
Sequence AACTGATGTAAAGTTCCCATCATGAATGTAATTAGGAATTGTGCATTTAGATCCTGAATGTGGCGAGAATGTGATTGGGGTCTTGGAGCAGTCAAGTCTGATCTGGCCTGTGTTCCTTCAGCTAAAAGAGTTTAACAAATACAAGCACTGGCTGAGCTTCAGACCTTCCATCGAAATGCAGACCACTTTGAACATCAGCACGTGCATGTGGGAATTCAAACTCCTGACGGTTCATTCACGATCACACATTTACCTGGATGCAATATAGAATACAGCTGCCCTGCCACGAATGAATGTGAAATCACAAAGCGCAGACGTAAATCCTGCCAGGCTTGCCGCTTCATGAAGTGTTTAAAAGTGGGCATGCTGAAAGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
Target Genes
       

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)
CircID chr1:216650973|216707486
ORF Type ORF1
Protein Length 50
Nucleotide Length 150
Protein Sequence MPTFKHFMKRQAWQDLRLRFVISHSFVAGQLYSILHPGKCVIVNEPSGV*
Nucleotide Sequence ATGCCCACTTTTAAACACTTCATGAAGCGGCAAGCCTGGCAGGATTTACGTCTGCGCTTTGTGATTTCACATTCATTCGTGGCAGGGCAGCTGTATTCTATATTGCATCCAGGTAAATGTGTGATCGTGAATGAACCGTCAGGAGTTTGA
CircID chr1:216650973|216707486
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MNRQEFEFPHARADVQSGLHFDGRSEAQPVLVFVKLF*
Nucleotide Sequence ATGAACCGTCAGGAGTTTGAATTCCCACATGCACGTGCTGATGTTCAAAGTGGTCTGCATTTCGATGGAAGGTCTGAAGCTCAGCCAGTGCTTGTATTTGTTAAACTCTTTTAG
CircID chr1:216650973|216707486
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MQTTLNISTCMWEFKLLTVHSRSHIYLDAI*
Nucleotide Sequence ATGCAGACCACTTTGAACATCAGCACGTGCATGTGGGAATTCAAACTCCTGACGGTTCATTCACGATCACACATTTACCTGGATGCAATATAG
CircID chr1:216650973|216707486
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MHVLMFKVVCISMEGLKLSQCLYLLNSFS*
Nucleotide Sequence ATGCACGTGCTGATGTTCAAAGTGGTCTGCATTTCGATGGAAGGTCTGAAGCTCAGCCAGTGCTTGTATTTGTTAAACTCTTTTAGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:216650973|216707486 TARDBP 0 1 0
chr1:216650973|216707486 FUS 0 1 0
chr1:216650973|216707486 EIF4A3 0 1 0
chr1:216650973|216707486 AGO2 0 1 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab