CircRNA Information

General Information
circRNA Basic Information
CircID chr1:218405169|218405332
Strand +
CircType exon
Host Gene ENSG00000092969.11;
Algorism CIRI2;DCC;find_circ;
Sequence ATGCCATCCCGCCCACTTTCTACAGACCCTACTTCAGAATTGTTCGATTTGACGTCTCAGCAATGGAGAAGAATGCTTCCAATTTGGTGAAAGCAGAGTTCAGAGTCTTTCGTTTGCAGAACCCAAAAGCCAGAGTGCCTGAACAACGGATTGAGCTATATCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:218405169|218405332 hsa-miR-375-5p 0 0 1
chr1:218405169|218405332 hsa-miR-375-3p 0 0 1
chr1:218405169|218405332 hsa-miR-519e-5p 0 0 1
chr1:218405169|218405332 hsa-miR-519e-3p 0 0 1
chr1:218405169|218405332 hsa-miR-545-5p 0 0 1
chr1:218405169|218405332 hsa-miR-545-3p 0 0 1
chr1:218405169|218405332 hsa-miR-610 0 0 1
chr1:218405169|218405332 hsa-miR-298 0 0 1
chr1:218405169|218405332 hsa-miR-924 0 0 1
chr1:218405169|218405332 hsa-miR-1253 0 0 1
chr1:218405169|218405332 hsa-miR-1282 0 0 1
chr1:218405169|218405332 hsa-miR-139-5p 0 0 1
chr1:218405169|218405332 hsa-miR-136-5p 0 1 1
chr1:218405169|218405332 hsa-miR-515-3p 0 0 1
chr1:218405169|218405332 hsa-miR-516a-3p 0 0 1
chr1:218405169|218405332 hsa-miR-550 0 0 1
chr1:218405169|218405332 hsa-miR-219-2-3p 0 0 1
chr1:218405169|218405332 hsa-miR-1201 0 0 1
chr1:218405169|218405332 hsa-miR-759 0 1 0
chr1:218405169|218405332 hsa-miR-3674 1 1 0
chr1:218405169|218405332 hsa-miR-4531 0 1 0
chr1:218405169|218405332 hsa-miR-6850-5p 1 0 0
chr1:218405169|218405332 hsa-miR-4436b-5p 1 0 0
chr1:218405169|218405332 hsa-miR-4793-5p 1 0 0
chr1:218405169|218405332 hsa-miR-4757-3p 1 0 0
chr1:218405169|218405332 hsa-miR-4724-5p 0 1 0
chr1:218405169|218405332 hsa-miR-4776-3p 0 1 0
chr1:218405169|218405332 hsa-miR-550a-5p 1 1 0
chr1:218405169|218405332 hsa-miR-33b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:218405169|218405332
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MEKNASNLVKAEFRVFRLQNPKARVPEQRIELYQ
Nucleotide Sequence ATGGAGAAGAATGCTTCCAATTTGGTGAAAGCAGAGTTCAGAGTCTTTCGTTTGCAGAACCCAAAAGCCAGAGTGCCTGAACAACGGATTGAGCTATATCAG
CircID chr1:218405169|218405332
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MPSRPLSTDPTSELFDLTSQQWRRMLPIW*
Nucleotide Sequence ATGCCATCCCGCCCACTTTCTACAGACCCTACTTCAGAATTGTTCGATTTGACGTCTCAGCAATGGAGAAGAATGCTTCCAATTTGGTGA
CircID chr1:218405169|218405332
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MFRHSGFWVLQTKDSELCFHQIGSILLHC
Nucleotide Sequence TTGTTCAGGCACTCTGGCTTTTGGGTTCTGCAAACGAAAGACTCTGAACTCTGCTTTCACCAAATTGGAAGCATTCTTCTCCATTGCTGA
CircID chr1:218405169|218405332
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MAFGFCKRKTLNSAFTKLEAFFSIAETSNRTILK
Nucleotide Sequence CTGGCTTTTGGGTTCTGCAAACGAAAGACTCTGAACTCTGCTTTCACCAAATTGGAAGCATTCTTCTCCATTGCTGAGACGTCAAATCGAACAATTCTGAAGTAG
CircID chr1:218405169|218405332
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MPSRPLSTDPTSELFDLTSQQWRRMLPIW
Nucleotide Sequence ATGCCATCCCGCCCACTTTCTACAGACCCTACTTCAGAATTGTTCGATTTGACGTCTCAGCAATGGAGAAGAATGCTTCCAATTTGGTGA
CircID chr1:218405169|218405332
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MEKNASNLVKAEFRVFRLQNPKARVPEQRIELYQ
Nucleotide Sequence ATGGAGAAGAATGCTTCCAATTTGGTGAAAGCAGAGTTCAGAGTCTTTCGTTTGCAGAACCCAAAAGCCAGAGTGCCTGAACAACGGATTGAGCTATATCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:218405169|218405332 NOP56 1 0 0
chr1:218405169|218405332 ELAVL1 1 1 0
chr1:218405169|218405332 RBM47 1 0 1
chr1:218405169|218405332 ADAR 0 1 0
chr1:218405169|218405332 U2AF2 0 6 0
chr1:218405169|218405332 RBFOX2 0 1 0
chr1:218405169|218405332 IGF2BP3 0 1 0
chr1:218405169|218405332 HNRNPA1 0 4 0
chr1:218405169|218405332 EIF4A3 0 0 1
chr1:218405169|218405332 AGO2 0 1 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab