CircRNA Information

General Information
circRNA Basic Information
CircID chr1:225844919|225845158
Strand +
CircType exon
Host Gene ENSG00000143819.11;
Algorism CIRI2;
Sequence ATAGACCTTCATCCTGGAAGTGAAAGAGCCGACGGAGGGGTGAGGCTGTGGCCCTGCGCCCCTCCGTCCTGCACAGCAGGGGGTTAAAGCGCCTGGGGGTGAGATCAGCTGGCCCACCCACAAGGAGCCATAAAGAAAAGGACAAATCCAGGGTCTCAACCGCTCTCCCCTCACTGAGGGCCTTCTCTTTTCTGGGAGGGCCACCCAGGCAGGGGCATGGGACAGCCTCTAAATCCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:225844919|225845158 hsa-miR-184 0 0 1
chr1:225844919|225845158 hsa-miR-370-5p 0 0 1
chr1:225844919|225845158 hsa-miR-370-3p 0 0 1
chr1:225844919|225845158 hsa-miR-328-5p 0 0 1
chr1:225844919|225845158 hsa-miR-328-3p 0 0 1
chr1:225844919|225845158 hsa-miR-135b-5p 0 0 1
chr1:225844919|225845158 hsa-miR-135b-3p 0 0 1
chr1:225844919|225845158 hsa-miR-493-5p 0 0 1
chr1:225844919|225845158 hsa-miR-493-3p 0 0 1
chr1:225844919|225845158 hsa-miR-504-5p 0 0 1
chr1:225844919|225845158 hsa-miR-504-3p 0 0 1
chr1:225844919|225845158 hsa-miR-661 0 0 1
chr1:225844919|225845158 hsa-miR-541-5p 0 0 1
chr1:225844919|225845158 hsa-miR-541-3p 0 0 1
chr1:225844919|225845158 hsa-miR-877-5p 0 0 1
chr1:225844919|225845158 hsa-miR-877-3p 0 0 1
chr1:225844919|225845158 hsa-miR-665 0 0 1
chr1:225844919|225845158 hsa-miR-1229-5p 0 0 1
chr1:225844919|225845158 hsa-miR-1229-3p 0 0 1
chr1:225844919|225845158 hsa-miR-663b 0 0 1
chr1:225844919|225845158 hsa-miR-1286 0 0 1
chr1:225844919|225845158 hsa-miR-1290 0 0 1
chr1:225844919|225845158 hsa-miR-1291 0 0 1
chr1:225844919|225845158 hsa-miR-1293 0 0 1
chr1:225844919|225845158 hsa-miR-1303 0 0 1
chr1:225844919|225845158 hsa-miR-769-5p 0 0 1
chr1:225844919|225845158 hsa-miR-491-5p 0 0 1
chr1:225844919|225845158 hsa-miR-485-5p 0 0 1
chr1:225844919|225845158 hsa-miR-423-5p 0 0 1
chr1:225844919|225845158 hsa-miR-654-5p 0 0 1
chr1:225844919|225845158 hsa-miR-361-3p 0 0 1
chr1:225844919|225845158 hsa-miR-876-5p 0 0 1
chr1:225844919|225845158 hsa-miR-135a 0 0 1
chr1:225844919|225845158 hsa-miR-1254 0 0 1
chr1:225844919|225845158 hsa-miR-3665 1 0 0
chr1:225844919|225845158 hsa-miR-3937 1 0 0
chr1:225844919|225845158 hsa-miR-4450 1 0 0
chr1:225844919|225845158 hsa-miR-4767 1 0 0
chr1:225844919|225845158 hsa-miR-6840-3p 1 0 0
chr1:225844919|225845158 hsa-miR-149-5p 1 0 0
chr1:225844919|225845158 hsa-miR-3150a-3p 1 0 0
chr1:225844919|225845158 hsa-miR-6857-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6840-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6759-5p 1 0 0
chr1:225844919|225845158 hsa-miR-23a-5p 1 0 0
chr1:225844919|225845158 hsa-miR-7109-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6789-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6499-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6752-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6803-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6751-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6763-5p 1 0 0
chr1:225844919|225845158 hsa-miR-939-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6791-5p 1 0 0
chr1:225844919|225845158 hsa-miR-6862-3p 1 0 0
chr1:225844919|225845158 hsa-miR-524-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:225844919|225845158
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence MRPSVLHSRGLKRLGVRSAGPPTRSHKEKDKSRVSTALPSLRAFSFLGGPPRQGHGTASKSP
Nucleotide Sequence CTGCGCCCCTCCGTCCTGCACAGCAGGGGGTTAAAGCGCCTGGGGGTGAGATCAGCTGGCCCACCCACAAGGAGCCATAAAGAAAAGGACAAATCCAGGGTCTCAACCGCTCTCCCCTCACTGAGGGCCTTCTCTTTTCTGGGAGGGCCACCCAGGCAGGGGCATGGGACAGCCTCTAAATCCCCA

CircID chr1:225844919|225845158
ORF Type ORF2
Protein Length 75
Nucleotide Length 225
Protein Sequence MSHAPAWVALPEKRRPSVRGERLRPWICPFLYGSLWVGQLISPPGALTPCCAGRRGAGPQPHPSVGSFTSRMKVY
Nucleotide Sequence CTGTCCCATGCCCCTGCCTGGGTGGCCCTCCCAGAAAAGAGAAGGCCCTCAGTGAGGGGAGAGCGGTTGAGACCCTGGATTTGTCCTTTTCTTTATGGCTCCTTGTGGGTGGGCCAGCTGATCTCACCCCCAGGCGCTTTAACCCCCTGCTGTGCAGGACGGAGGGGCGCAGGGCCACAGCCTCACCCCTCCGTCGGCTCTTTCACTTCCAGGATGAAGGTCTAT

CircID chr1:225844919|225845158
ORF Type ORF3
Protein Length 69
Nucleotide Length 207
Protein Sequence MGGPPRKEKALSEGRAVETLDLSFSLWLLVGGPADLTPRRFNPLLCRTEGRRATASPLRRLFHFQDEGL
Nucleotide Sequence CTGGGTGGCCCTCCCAGAAAAGAGAAGGCCCTCAGTGAGGGGAGAGCGGTTGAGACCCTGGATTTGTCCTTTTCTTTATGGCTCCTTGTGGGTGGGCCAGCTGATCTCACCCCCAGGCGCTTTAACCCCCTGCTGTGCAGGACGGAGGGGCGCAGGGCCACAGCCTCACCCCTCCGTCGGCTCTTTCACTTCCAGGATGAAGGTCTA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites