CircRNA Information

General Information
circRNA Basic Information
CircID chr1:225846173|225846334
Strand +
CircType exon
Host Gene ENSG00000196187.10;
Algorism CIRI2;
Sequence AAGGACCACTCATAATATGCCCATTGGACCACAGTTAAGATCCAGCCTCTCTCACCTCTTCAGGGCTGAGTGCATGAGTCTGCACCTCCAGGCAGGCTCTGTGCAGTACTCACCCCCTCCGTCTGCTCCCTCCAAGGTGTGGGGGTGGGCAGTGCTCAGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:225846173|225846334 hsa-miR-217-5p 0 0 1
chr1:225846173|225846334 hsa-miR-217-3p 0 0 1
chr1:225846173|225846334 hsa-miR-432-5p 0 0 1
chr1:225846173|225846334 hsa-miR-432-3p 0 0 1
chr1:225846173|225846334 hsa-miR-596 0 1 1
chr1:225846173|225846334 hsa-miR-661 0 0 1
chr1:225846173|225846334 hsa-miR-656-5p 0 0 1
chr1:225846173|225846334 hsa-miR-656-3p 0 0 1
chr1:225846173|225846334 hsa-miR-1228-5p 0 0 1
chr1:225846173|225846334 hsa-miR-1228-3p 0 0 1
chr1:225846173|225846334 hsa-miR-1287-5p 0 0 1
chr1:225846173|225846334 hsa-miR-1287-3p 0 0 1
chr1:225846173|225846334 hsa-miR-1278 0 0 1
chr1:225846173|225846334 hsa-miR-512-5p 0 1 1
chr1:225846173|225846334 hsa-miR-485-5p 0 0 1
chr1:225846173|225846334 hsa-miR-125a-5p 0 1 1
chr1:225846173|225846334 hsa-miR-509-3-5p 0 0 1
chr1:225846173|225846334 hsa-miR-509-5p 0 0 1
chr1:225846173|225846334 hsa-miR-125b 0 0 1
chr1:225846173|225846334 hsa-miR-1254 0 0 1
chr1:225846173|225846334 hsa-miR-768-5p 0 0 1
chr1:225846173|225846334 hsa-miR-762 1 0 0
chr1:225846173|225846334 hsa-miR-1294 1 0 0
chr1:225846173|225846334 hsa-miR-4319 0 1 0
chr1:225846173|225846334 hsa-miR-4253 1 0 0
chr1:225846173|225846334 hsa-miR-3945 1 1 0
chr1:225846173|225846334 hsa-miR-4510 0 1 0
chr1:225846173|225846334 hsa-miR-4534 1 0 0
chr1:225846173|225846334 hsa-miR-1587 1 0 0
chr1:225846173|225846334 hsa-miR-4539 1 0 0
chr1:225846173|225846334 hsa-miR-4710 1 0 0
chr1:225846173|225846334 hsa-miR-4739 1 0 0
chr1:225846173|225846334 hsa-miR-6086 1 0 0
chr1:225846173|225846334 hsa-miR-6090 1 0 0
chr1:225846173|225846334 hsa-miR-6127 1 1 0
chr1:225846173|225846334 hsa-miR-6129 1 0 0
chr1:225846173|225846334 hsa-miR-6130 0 1 0
chr1:225846173|225846334 hsa-miR-6133 1 1 0
chr1:225846173|225846334 hsa-miR-7703 0 1 0
chr1:225846173|225846334 hsa-miR-7976 0 1 0
chr1:225846173|225846334 hsa-miR-8085 1 0 0
chr1:225846173|225846334 hsa-miR-12127 1 0 0
chr1:225846173|225846334 hsa-miR-7155-5p 1 0 0
chr1:225846173|225846334 hsa-miR-323a-5p 1 0 0
chr1:225846173|225846334 hsa-miR-1273h-3p 0 1 0
chr1:225846173|225846334 hsa-miR-6747-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6894-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6515-5p 0 1 0
chr1:225846173|225846334 hsa-miR-6089 1 0 0
chr1:225846173|225846334 hsa-miR-4709-3p 0 1 0
chr1:225846173|225846334 hsa-miR-6730-5p 1 0 0
chr1:225846173|225846334 hsa-miR-7160-5p 1 0 0
chr1:225846173|225846334 hsa-miR-659-3p 1 0 0
chr1:225846173|225846334 hsa-miR-185-3p 1 0 0
chr1:225846173|225846334 hsa-miR-6782-5p 1 0 0
chr1:225846173|225846334 hsa-miR-3150b-3p 1 0 0
chr1:225846173|225846334 hsa-miR-345-3p 1 1 0
chr1:225846173|225846334 hsa-miR-7109-5p 1 1 0
chr1:225846173|225846334 hsa-miR-30c-2-3p 1 0 0
chr1:225846173|225846334 hsa-miR-6749-5p 1 0 0
chr1:225846173|225846334 hsa-miR-7854-3p 0 1 0
chr1:225846173|225846334 hsa-miR-6834-5p 1 0 0
chr1:225846173|225846334 hsa-miR-4743-5p 1 0 0
chr1:225846173|225846334 hsa-miR-4446-3p 1 0 0
chr1:225846173|225846334 hsa-miR-3162-5p 0 1 0
chr1:225846173|225846334 hsa-miR-6802-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6781-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6866-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6761-5p 1 0 0
chr1:225846173|225846334 hsa-miR-767-3p 0 1 0
chr1:225846173|225846334 hsa-miR-6890-3p 0 1 0
chr1:225846173|225846334 hsa-miR-1233-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6769b-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6812-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6865-5p 1 0 0
chr1:225846173|225846334 hsa-miR-1343-5p 1 0 0
chr1:225846173|225846334 hsa-miR-5001-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6743-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6752-5p 1 1 0
chr1:225846173|225846334 hsa-miR-6754-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6756-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6803-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6813-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6851-5p 1 0 0
chr1:225846173|225846334 hsa-miR-10401-5p 1 0 0
chr1:225846173|225846334 hsa-miR-1249-5p 1 1 0
chr1:225846173|225846334 hsa-miR-6779-5p 0 1 0
chr1:225846173|225846334 hsa-miR-6797-5p 1 1 0
chr1:225846173|225846334 hsa-miR-3620-5p 1 0 0
chr1:225846173|225846334 hsa-miR-4649-5p 1 0 0
chr1:225846173|225846334 hsa-miR-4745-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6795-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6858-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6883-5p 0 1 0
chr1:225846173|225846334 hsa-miR-6887-5p 1 1 0
chr1:225846173|225846334 hsa-miR-939-5p 1 0 0
chr1:225846173|225846334 hsa-miR-4758-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6731-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6758-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6856-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6736-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6891-5p 1 0 0
chr1:225846173|225846334 hsa-miR-6785-5p 0 1 0
chr1:225846173|225846334 hsa-miR-3689d 0 1 0
chr1:225846173|225846334 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:225846173|225846334
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MPIGPQLRSSLSHLFRAECMSLHLQAGSVQYSPPPSAPSKVWGWAVLR
Nucleotide Sequence ATGCCCATTGGACCACAGTTAAGATCCAGCCTCTCTCACCTCTTCAGGGCTGAGTGCATGAGTCTGCACCTCCAGGCAGGCTCTGTGCAGTACTCACCCCCTCCGTCTGCTCCCTCCAAGGTGTGGGGGTGGGCAGTGCTCAGG
CircID chr1:225846173|225846334
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MSTAHPHTLEGADGGGEYCTEPAWRCRLMHSALKR
Nucleotide Sequence CTGAGCACTGCCCACCCCCACACCTTGGAGGGAGCAGACGGAGGGGGTGAGTACTGCACAGAGCCTGCCTGGAGGTGCAGACTCATGCACTCAGCCCTGAAGAGGTGA
CircID chr1:225846173|225846334
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MPTPTPWREQTEGVSTAQSLPGGADSCTQP
Nucleotide Sequence CTGCCCACCCCCACACCTTGGAGGGAGCAGACGGAGGGGGTGAGTACTGCACAGAGCCTGCCTGGAGGTGCAGACTCATGCACTCAGCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab