CircRNA Information

General Information
circRNA Basic Information
CircID chr1:225858693|225858848
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCAATCAACGAAGCTTTTTTCCTTCCTTCCTGGCCCCTCCCCGTAGTGTCCATGATAGACATGCCTCACTGGTACATCCCTGCTTCTGTCAGGAGCCCTGCATGGGTGCCACAAAATCTATACAATTTTGAATGGATGCTTGATAGTCTACCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:225858693|225858848 hsa-miR-379-5p 0 0 1
chr1:225858693|225858848 hsa-miR-379-3p 0 0 1
chr1:225858693|225858848 hsa-miR-568 0 0 1
chr1:225858693|225858848 hsa-miR-1252-5p 0 0 1
chr1:225858693|225858848 hsa-miR-1252-3p 0 0 1
chr1:225858693|225858848 hsa-miR-1827 0 0 1
chr1:225858693|225858848 hsa-miR-423-5p 1 1 1
chr1:225858693|225858848 hsa-miR-509-3p 0 0 1
chr1:225858693|225858848 hsa-miR-490-5p 0 0 1
chr1:225858693|225858848 hsa-miR-663a 1 0 0
chr1:225858693|225858848 hsa-miR-298 1 1 0
chr1:225858693|225858848 hsa-miR-3149 0 1 0
chr1:225858693|225858848 hsa-miR-4270 1 0 0
chr1:225858693|225858848 hsa-miR-3660 0 1 0
chr1:225858693|225858848 hsa-miR-3936 1 0 0
chr1:225858693|225858848 hsa-miR-4476 1 1 0
chr1:225858693|225858848 hsa-miR-4488 1 0 0
chr1:225858693|225858848 hsa-miR-4489 1 1 0
chr1:225858693|225858848 hsa-miR-4525 1 0 0
chr1:225858693|225858848 hsa-miR-4526 0 1 0
chr1:225858693|225858848 hsa-miR-4651 1 0 0
chr1:225858693|225858848 hsa-miR-4688 1 0 0
chr1:225858693|225858848 hsa-miR-4706 1 0 0
chr1:225858693|225858848 hsa-miR-4734 1 1 0
chr1:225858693|225858848 hsa-miR-4739 1 0 0
chr1:225858693|225858848 hsa-miR-4779 1 1 0
chr1:225858693|225858848 hsa-miR-5194 1 0 0
chr1:225858693|225858848 hsa-miR-6085 1 0 0
chr1:225858693|225858848 hsa-miR-6132 1 0 0
chr1:225858693|225858848 hsa-miR-6133 1 0 0
chr1:225858693|225858848 hsa-miR-6165 1 0 0
chr1:225858693|225858848 hsa-miR-6745 1 0 0
chr1:225858693|225858848 hsa-miR-12128 1 0 0
chr1:225858693|225858848 hsa-miR-4433a-3p 1 0 0
chr1:225858693|225858848 hsa-miR-6765-5p 1 0 0
chr1:225858693|225858848 hsa-miR-7106-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6825-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6894-5p 1 0 0
chr1:225858693|225858848 hsa-miR-4687-3p 1 0 0
chr1:225858693|225858848 hsa-miR-6799-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6510-5p 1 1 0
chr1:225858693|225858848 hsa-miR-1227-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6089 1 0 0
chr1:225858693|225858848 hsa-miR-505-5p 1 0 0
chr1:225858693|225858848 hsa-miR-4755-3p 1 0 0
chr1:225858693|225858848 hsa-miR-6721-5p 1 0 0
chr1:225858693|225858848 hsa-miR-4655-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6829-5p 1 0 0
chr1:225858693|225858848 hsa-miR-23a-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6881-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6786-5p 1 0 0
chr1:225858693|225858848 hsa-miR-5088-5p 1 0 0
chr1:225858693|225858848 hsa-miR-1229-5p 1 0 0
chr1:225858693|225858848 hsa-miR-4640-5p 1 1 0
chr1:225858693|225858848 hsa-miR-1908-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6771-5p 1 0 0
chr1:225858693|225858848 hsa-miR-3202 1 1 0
chr1:225858693|225858848 hsa-miR-149-3p 1 1 0
chr1:225858693|225858848 hsa-miR-6781-5p 1 0 0
chr1:225858693|225858848 hsa-miR-194-3p 0 1 0
chr1:225858693|225858848 hsa-miR-664b-5p 1 0 0
chr1:225858693|225858848 hsa-miR-1207-5p 1 0 0
chr1:225858693|225858848 hsa-miR-4763-3p 1 0 0
chr1:225858693|225858848 hsa-miR-6816-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6775-5p 1 0 0
chr1:225858693|225858848 hsa-miR-1343-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6737-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6743-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6754-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6756-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6813-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6819-5p 1 0 0
chr1:225858693|225858848 hsa-miR-1249-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6722-3p 1 0 0
chr1:225858693|225858848 hsa-miR-6763-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6779-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6780a-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6797-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6875-5p 1 0 0
chr1:225858693|225858848 hsa-miR-7111-5p 1 0 0
chr1:225858693|225858848 hsa-miR-4728-5p 1 1 0
chr1:225858693|225858848 hsa-miR-5189-5p 1 0 0
chr1:225858693|225858848 hsa-miR-5196-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6780b-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6836-5p 1 1 0
chr1:225858693|225858848 hsa-miR-10396a-5p 1 0 0
chr1:225858693|225858848 hsa-miR-10396b-5p 1 0 0
chr1:225858693|225858848 hsa-miR-1237-5p 1 0 0
chr1:225858693|225858848 hsa-miR-1909-3p 1 0 0
chr1:225858693|225858848 hsa-miR-328-5p 1 0 0
chr1:225858693|225858848 hsa-miR-4685-5p 1 0 0
chr1:225858693|225858848 hsa-miR-4725-3p 1 0 0
chr1:225858693|225858848 hsa-miR-4726-5p 1 1 0
chr1:225858693|225858848 hsa-miR-4749-5p 1 1 0
chr1:225858693|225858848 hsa-miR-6738-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6777-5p 1 1 0
chr1:225858693|225858848 hsa-miR-6795-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6858-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6883-5p 1 1 0
chr1:225858693|225858848 hsa-miR-6887-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6889-5p 1 1 0
chr1:225858693|225858848 hsa-miR-4723-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6845-5p 1 1 0
chr1:225858693|225858848 hsa-miR-939-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6511a-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6511b-5p 1 0 0
chr1:225858693|225858848 hsa-miR-1914-3p 1 0 0
chr1:225858693|225858848 hsa-miR-4747-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6876-5p 1 1 0
chr1:225858693|225858848 hsa-miR-6785-5p 1 1 0
chr1:225858693|225858848 hsa-miR-4667-5p 1 0 0
chr1:225858693|225858848 hsa-miR-3184-5p 1 0 0
chr1:225858693|225858848 hsa-miR-6762-5p 1 1 0
chr1:225858693|225858848 hsa-miR-10400-3p 1 0 0
chr1:225858693|225858848 hsa-miR-135a-2-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:225858693|225858848
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MAPPRSVHDRHASLVHPCFCQEPCMGATKSIQF
Nucleotide Sequence CTGGCCCCTCCCCGTAGTGTCCATGATAGACATGCCTCACTGGTACATCCCTGCTTCTGTCAGGAGCCCTGCATGGGTGCCACAAAATCTATACAATTTTGA
CircID chr1:225858693|225858848
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MIDMPHWYIPASVRSPAWVPQNLYNFEWMLDSLP
Nucleotide Sequence ATGATAGACATGCCTCACTGGTACATCCCTGCTTCTGTCAGGAGCCCTGCATGGGTGCCACAAAATCTATACAATTTTGAATGGATGCTTGATAGTCTACCA
CircID chr1:225858693|225858848
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MLLSGALHGCHKIYTILNGCLIVYQ
Nucleotide Sequence CTGCTTCTGTCAGGAGCCCTGCATGGGTGCCACAAAATCTATACAATTTTGAATGGATGCTTGATAGTCTACCAA
CircID chr1:225858693|225858848
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MWHPCRAPDRSRDVPVRHVYHGHYGEGPGRKEKSFVDW
Nucleotide Sequence TTGTGGCACCCATGCAGGGCTCCTGACAGAAGCAGGGATGTACCAGTGAGGCATGTCTATCATGGACACTACGGGGAGGGGCCAGGAAGGAAGGAAAAAAGCTTCGTTGATTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab