CircRNA Information

General Information
circRNA Basic Information
CircID chr1:225922903|225923149
Strand -
CircType exon
Host Gene ENSG00000143811.15;
Algorism CIRI2;
Sequence TGCCTGTCACCTGCCTCATCAGCCATCCTCTCCCACAGAGCACAGGTTTTGGGTGAAGACTTGGAATATGTTTTTGGAGAACAGAACAACTAACTCACCAGATTCTTCCCAATATGCTCATTCACGACTCAGAATAACAGCAAAGTGGCCACTGTTGTAAATGAGGAAATAGCCTCAAAGTGGCTGAGTACTTTAAGGTCATACAACTCGTCTATTAAGAAAAATGGCTGAGCGCAGTGGCTCACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:225922903|225923149 hsa-miR-412-5p 0 0 1
chr1:225922903|225923149 hsa-miR-412-3p 0 0 1
chr1:225922903|225923149 hsa-miR-510-5p 0 0 1
chr1:225922903|225923149 hsa-miR-510-3p 0 0 1
chr1:225922903|225923149 hsa-miR-559 0 0 1
chr1:225922903|225923149 hsa-miR-588 0 0 1
chr1:225922903|225923149 hsa-miR-633 0 0 1
chr1:225922903|225923149 hsa-miR-649 0 1 1
chr1:225922903|225923149 hsa-miR-1264 0 1 1
chr1:225922903|225923149 hsa-miR-940 0 0 1
chr1:225922903|225923149 hsa-miR-297 0 0 1
chr1:225922903|225923149 hsa-miR-1238-5p 0 0 1
chr1:225922903|225923149 hsa-miR-1238-3p 0 0 1
chr1:225922903|225923149 hsa-miR-548j-5p 0 0 1
chr1:225922903|225923149 hsa-miR-548j-3p 0 0 1
chr1:225922903|225923149 hsa-miR-548k 0 0 1
chr1:225922903|225923149 hsa-miR-548l 0 0 1
chr1:225922903|225923149 hsa-miR-1304-5p 0 0 1
chr1:225922903|225923149 hsa-miR-1304-3p 0 0 1
chr1:225922903|225923149 hsa-miR-1257 0 0 1
chr1:225922903|225923149 hsa-miR-1279 0 0 1
chr1:225922903|225923149 hsa-miR-1827 0 0 1
chr1:225922903|225923149 hsa-miR-512-5p 0 1 1
chr1:225922903|225923149 hsa-miR-125a-3p 0 0 1
chr1:225922903|225923149 hsa-miR-485-5p 0 0 1
chr1:225922903|225923149 hsa-miR-548b-5p 0 0 1
chr1:225922903|225923149 hsa-miR-548d-5p 0 0 1
chr1:225922903|225923149 hsa-miR-515-5p 0 0 1
chr1:225922903|225923149 hsa-miR-542-3p 0 0 1
chr1:225922903|225923149 hsa-miR-548c-5p 0 0 1
chr1:225922903|225923149 hsa-miR-548a-5p 0 0 1
chr1:225922903|225923149 hsa-miR-548i 0 0 1
chr1:225922903|225923149 hsa-miR-548h 0 0 1
chr1:225922903|225923149 hsa-miR-638 1 0 0
chr1:225922903|225923149 hsa-miR-765 1 0 0
chr1:225922903|225923149 hsa-miR-663b 1 0 0
chr1:225922903|225923149 hsa-miR-1275 1 0 0
chr1:225922903|225923149 hsa-miR-1193 1 0 0
chr1:225922903|225923149 hsa-miR-3175 1 0 0
chr1:225922903|225923149 hsa-miR-4298 1 0 0
chr1:225922903|225923149 hsa-miR-4252 0 1 0
chr1:225922903|225923149 hsa-miR-4271 1 0 0
chr1:225922903|225923149 hsa-miR-3665 0 1 0
chr1:225922903|225923149 hsa-miR-3929 1 0 0
chr1:225922903|225923149 hsa-miR-4502 0 1 0
chr1:225922903|225923149 hsa-miR-2392 1 1 0
chr1:225922903|225923149 hsa-miR-4654 1 0 0
chr1:225922903|225923149 hsa-miR-4689 1 0 0
chr1:225922903|225923149 hsa-miR-4739 1 0 0
chr1:225922903|225923149 hsa-miR-5192 1 0 0
chr1:225922903|225923149 hsa-miR-5698 1 0 0
chr1:225922903|225923149 hsa-miR-5787 1 0 0
chr1:225922903|225923149 hsa-miR-6133 1 0 0
chr1:225922903|225923149 hsa-miR-8075 1 1 0
chr1:225922903|225923149 hsa-miR-8085 1 1 0
chr1:225922903|225923149 hsa-miR-9500 1 0 0
chr1:225922903|225923149 hsa-miR-12119 1 0 0
chr1:225922903|225923149 hsa-miR-138-5p 1 0 0
chr1:225922903|225923149 hsa-miR-26b-3p 0 1 0
chr1:225922903|225923149 hsa-miR-7-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6734-5p 1 0 0
chr1:225922903|225923149 hsa-miR-3150a-3p 1 0 0
chr1:225922903|225923149 hsa-miR-7106-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6894-5p 1 0 0
chr1:225922903|225923149 hsa-miR-4687-3p 1 0 0
chr1:225922903|225923149 hsa-miR-766-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6804-5p 1 0 0
chr1:225922903|225923149 hsa-miR-7114-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6757-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6880-5p 1 0 0
chr1:225922903|225923149 hsa-miR-7847-3p 1 0 0
chr1:225922903|225923149 hsa-miR-6746-5p 1 0 0
chr1:225922903|225923149 hsa-miR-4474-3p 1 0 0
chr1:225922903|225923149 hsa-miR-191-3p 0 1 0
chr1:225922903|225923149 hsa-miR-8069 1 0 0
chr1:225922903|225923149 hsa-miR-3605-5p 0 1 0
chr1:225922903|225923149 hsa-miR-3180-3p 1 0 0
chr1:225922903|225923149 hsa-miR-6796-5p 1 0 0
chr1:225922903|225923149 hsa-miR-3691-3p 0 1 0
chr1:225922903|225923149 hsa-miR-30c-2-3p 0 1 0
chr1:225922903|225923149 hsa-miR-1908-5p 1 0 0
chr1:225922903|225923149 hsa-miR-1228-5p 1 0 0
chr1:225922903|225923149 hsa-miR-92b-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6739-3p 0 1 0
chr1:225922903|225923149 hsa-miR-149-3p 1 0 0
chr1:225922903|225923149 hsa-miR-6824-5p 1 0 0
chr1:225922903|225923149 hsa-miR-670-3p 0 1 0
chr1:225922903|225923149 hsa-miR-4709-5p 0 1 0
chr1:225922903|225923149 hsa-miR-5007-5p 1 1 0
chr1:225922903|225923149 hsa-miR-5585-5p 0 1 0
chr1:225922903|225923149 hsa-miR-1233-5p 1 1 0
chr1:225922903|225923149 hsa-miR-4763-3p 1 0 0
chr1:225922903|225923149 hsa-miR-6769b-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6778-5p 1 1 0
chr1:225922903|225923149 hsa-miR-6812-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6870-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6893-5p 0 1 0
chr1:225922903|225923149 hsa-miR-6756-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6803-5p 1 0 0
chr1:225922903|225923149 hsa-miR-10401-5p 1 0 0
chr1:225922903|225923149 hsa-miR-11181-3p 1 0 0
chr1:225922903|225923149 hsa-miR-6751-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6763-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6779-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6780a-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6788-5p 1 1 0
chr1:225922903|225923149 hsa-miR-6797-5p 1 0 0
chr1:225922903|225923149 hsa-miR-7111-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6754-3p 0 1 0
chr1:225922903|225923149 hsa-miR-4728-5p 1 0 0
chr1:225922903|225923149 hsa-miR-5196-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6780b-5p 1 0 0
chr1:225922903|225923149 hsa-miR-1237-5p 1 0 0
chr1:225922903|225923149 hsa-miR-4649-5p 1 0 0
chr1:225922903|225923149 hsa-miR-4701-3p 1 0 0
chr1:225922903|225923149 hsa-miR-4725-3p 1 0 0
chr1:225922903|225923149 hsa-miR-6729-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6846-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6883-5p 1 0 0
chr1:225922903|225923149 hsa-miR-4769-5p 1 0 0
chr1:225922903|225923149 hsa-miR-30c-1-3p 1 1 0
chr1:225922903|225923149 hsa-miR-6731-5p 1 1 0
chr1:225922903|225923149 hsa-miR-6856-5p 1 0 0
chr1:225922903|225923149 hsa-miR-5008-3p 0 1 0
chr1:225922903|225923149 hsa-miR-3679-5p 1 0 0
chr1:225922903|225923149 hsa-miR-4646-5p 1 0 0
chr1:225922903|225923149 hsa-miR-4747-5p 1 0 0
chr1:225922903|225923149 hsa-miR-6785-5p 1 1 0
chr1:225922903|225923149 hsa-miR-6884-5p 1 0 0
chr1:225922903|225923149 hsa-miR-373-3p 0 1 0
chr1:225922903|225923149 hsa-miR-372-3p 0 1 0
chr1:225922903|225923149 hsa-miR-520e-3p 0 1 0
chr1:225922903|225923149 hsa-miR-7157-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:225922903|225923149
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MSPASSAILSHRAQVLGEDLEYVFGEQNN
Nucleotide Sequence CTGTCACCTGCCTCATCAGCCATCCTCTCCCACAGAGCACAGGTTTTGGGTGAAGACTTGGAATATGTTTTTGGAGAACAGAACAACTAA
CircID chr1:225922903|225923149
ORF Type ORF2
Protein Length 49
Nucleotide Length 150
Protein Sequence MPHQPSSPTEHRFWVKTWNMFLENRTTNSPDSSQYAHSRLRITAKWPLL
Nucleotide Sequence CTGCCTCATCAGCCATCCTCTCCCACAGAGCACAGGTTTTGGGTGAAGACTTGGAATATGTTTTTGGAGAACAGAACAACTAACTCACCAGATTCTTCCCAATATGCTCATTCACGACTCAGAATAACAGCAAAGTGGCCACTGTTGTAA
CircID chr1:225922903|225923149
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MTLKYSATLRLFPHLQQWPLCCYSES
Nucleotide Sequence ATGACCTTAAAGTACTCAGCCACTTTGAGGCTATTTCCTCATTTACAACAGTGGCCACTTTGCTGTTATTCTGAGTCGTGA
CircID chr1:225922903|225923149
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MYDLKVLSHFEAISSFTTVATLLLF
Nucleotide Sequence TTGTATGACCTTAAAGTACTCAGCCACTTTGAGGCTATTTCCTCATTTACAACAGTGGCCACTTTGCTGTTATTCTGA
CircID chr1:225922903|225923149
ORF Type ORF5
Protein Length 29
Nucleotide Length 87
Protein Sequence MFCSPKTYSKSSPKTCALWERMADEAGDR
Nucleotide Sequence TTGTTCTGTTCTCCAAAAACATATTCCAAGTCTTCACCCAAAACCTGTGCTCTGTGGGAGAGGATGGCTGATGAGGCAGGTGACAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab