CircRNA Information

General Information
circRNA Basic Information
CircID chr1:22639087|22639227
Strand -
CircType exon
Host Gene ENSG00000173372.15;
Algorism CIRI2;
Sequence CAGGAAGAACCGTACCAGAACCACTCCGGCCGATTCGTCTGCACTGTACCCGGCTACTACTACTTCACCTTCCAGGTGCTGTCCCAGTGGGAAATCTGCCTGTCCATCGTCTCCTCCTCAAGGGGCCAGGTCCGACGCTCC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:22639087|22639227 hsa-miR-148a-5p 0 0 1
chr1:22639087|22639227 hsa-miR-148a-3p 0 0 1
chr1:22639087|22639227 hsa-miR-152-5p 0 0 1
chr1:22639087|22639227 hsa-miR-152-3p 0 0 1
chr1:22639087|22639227 hsa-miR-148b-5p 0 0 1
chr1:22639087|22639227 hsa-miR-148b-3p 0 0 1
chr1:22639087|22639227 hsa-miR-492 0 0 1
chr1:22639087|22639227 hsa-miR-619-5p 0 0 1
chr1:22639087|22639227 hsa-miR-619-3p 0 0 1
chr1:22639087|22639227 hsa-miR-631 0 0 1
chr1:22639087|22639227 hsa-miR-765 1 0 1
chr1:22639087|22639227 hsa-miR-140-5p 0 0 1
chr1:22639087|22639227 hsa-miR-1224-5p 0 0 1
chr1:22639087|22639227 hsa-miR-188-3p 0 0 1
chr1:22639087|22639227 hsa-miR-1244 0 0 1
chr1:22639087|22639227 hsa-miR-1302 0 0 1
chr1:22639087|22639227 hsa-miR-1260 0 0 1
chr1:22639087|22639227 hsa-miR-608 1 0 0
chr1:22639087|22639227 hsa-miR-638 1 0 0
chr1:22639087|22639227 hsa-miR-2861 1 0 0
chr1:22639087|22639227 hsa-miR-4269 1 0 0
chr1:22639087|22639227 hsa-miR-4430 1 0 0
chr1:22639087|22639227 hsa-miR-4481 1 0 0
chr1:22639087|22639227 hsa-miR-1587 1 0 0
chr1:22639087|22639227 hsa-miR-4651 1 0 0
chr1:22639087|22639227 hsa-miR-4688 1 0 0
chr1:22639087|22639227 hsa-miR-4689 1 0 0
chr1:22639087|22639227 hsa-miR-4739 1 0 0
chr1:22639087|22639227 hsa-miR-4754 1 0 0
chr1:22639087|22639227 hsa-miR-4784 1 0 0
chr1:22639087|22639227 hsa-miR-6081 1 0 0
chr1:22639087|22639227 hsa-miR-12118 1 0 0
chr1:22639087|22639227 hsa-miR-4433b-3p 1 0 0
chr1:22639087|22639227 hsa-miR-6734-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6765-5p 1 0 0
chr1:22639087|22639227 hsa-miR-7106-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6825-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6894-5p 1 0 0
chr1:22639087|22639227 hsa-miR-25-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6799-5p 1 0 0
chr1:22639087|22639227 hsa-miR-8071 1 0 0
chr1:22639087|22639227 hsa-miR-139-3p 1 0 0
chr1:22639087|22639227 hsa-miR-6089 1 0 0
chr1:22639087|22639227 hsa-miR-3192-5p 1 0 0
chr1:22639087|22639227 hsa-miR-7847-3p 1 0 0
chr1:22639087|22639227 hsa-miR-4695-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6730-5p 1 0 0
chr1:22639087|22639227 hsa-miR-5589-5p 1 0 0
chr1:22639087|22639227 hsa-miR-7108-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6732-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6798-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6888-5p 1 0 0
chr1:22639087|22639227 hsa-miR-1909-5p 1 0 0
chr1:22639087|22639227 hsa-miR-1229-5p 1 0 0
chr1:22639087|22639227 hsa-miR-1908-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6771-5p 1 0 0
chr1:22639087|22639227 hsa-miR-4690-5p 1 0 0
chr1:22639087|22639227 hsa-let-7b-5p 1 0 0
chr1:22639087|22639227 hsa-miR-92b-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6749-5p 1 0 0
chr1:22639087|22639227 hsa-miR-7854-3p 1 0 0
chr1:22639087|22639227 hsa-miR-4743-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6824-5p 1 0 0
chr1:22639087|22639227 hsa-let-7g-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6781-5p 1 0 0
chr1:22639087|22639227 hsa-miR-3191-3p 1 0 0
chr1:22639087|22639227 hsa-miR-1225-5p 1 0 0
chr1:22639087|22639227 hsa-let-7i-5p 1 0 0
chr1:22639087|22639227 hsa-let-7a-5p 1 0 0
chr1:22639087|22639227 hsa-miR-4638-5p 1 0 0
chr1:22639087|22639227 hsa-miR-4750-5p 1 0 0
chr1:22639087|22639227 hsa-miR-1207-5p 1 0 0
chr1:22639087|22639227 hsa-miR-4763-3p 1 0 0
chr1:22639087|22639227 hsa-miR-6787-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6870-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6743-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6851-5p 1 0 0
chr1:22639087|22639227 hsa-miR-7107-5p 1 0 0
chr1:22639087|22639227 hsa-miR-11181-3p 1 0 0
chr1:22639087|22639227 hsa-miR-1249-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6779-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6780a-5p 1 0 0
chr1:22639087|22639227 hsa-miR-7111-5p 1 0 0
chr1:22639087|22639227 hsa-miR-3620-5p 1 0 0
chr1:22639087|22639227 hsa-miR-5189-5p 1 0 0
chr1:22639087|22639227 hsa-miR-4745-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6738-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6858-5p 1 0 0
chr1:22639087|22639227 hsa-miR-4723-5p 1 0 0
chr1:22639087|22639227 hsa-miR-4758-5p 1 0 0
chr1:22639087|22639227 hsa-miR-6511b-5p 1 0 0
chr1:22639087|22639227 hsa-miR-1914-3p 1 0 0
chr1:22639087|22639227 hsa-miR-3173-3p 1 0 0
chr1:22639087|22639227 hsa-miR-6791-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:22639087|22639227
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MYPATTTSPSRCCPSGKSACPSSPPQGARSDA
Nucleotide Sequence CTGTACCCGGCTACTACTACTTCACCTTCCAGGTGCTGTCCCAGTGGGAAATCTGCCTGTCCATCGTCTCCTCCTCAAGGGGCCAGGTCCGACGCT
CircID chr1:22639087|22639227
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MHCTRLLLLHLPGAVPVGNLPVHRLLLKGPGPTL
Nucleotide Sequence CTGCACTGTACCCGGCTACTACTACTTCACCTTCCAGGTGCTGTCCCAGTGGGAAATCTGCCTGTCCATCGTCTCCTCCTCAAGGGGCCAGGTCCGACGCTC
CircID chr1:22639087|22639227
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MGQHLEGEVVVAGYSADESAGVVLVRFFL
Nucleotide Sequence CTGGGACAGCACCTGGAAGGTGAAGTAGTAGTAGCCGGGTACAGTGCAGACGAATCGGCCGGAGTGGTTCTGGTACGGTTCTTCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab