CircRNA Information

General Information
circRNA Basic Information
CircID chr1:226407810|226407951
Strand -
CircType exon
Host Gene ENSG00000143799.11;
Algorism CIRI2;
Sequence CTGCACCATGATGGCCATCCGGAGCGAGTCCTTGGGGATGCTCTCGCTGCATTTCTTGCAAGAGGCGCGCCCGCTCTTGGCGTACTCGACTCGATAGAGCTTATCCGAAGACTCCGCCATCCTCCCCTAGCTGCCGCCAAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:226407810|226407951 hsa-miR-335-5p 0 0 1
chr1:226407810|226407951 hsa-miR-335-3p 0 0 1
chr1:226407810|226407951 hsa-miR-924 0 0 1
chr1:226407810|226407951 hsa-miR-324-5p 0 1 1
chr1:226407810|226407951 hsa-miR-637 1 0 0
chr1:226407810|226407951 hsa-miR-638 1 0 0
chr1:226407810|226407951 hsa-miR-663a 1 0 0
chr1:226407810|226407951 hsa-miR-1275 1 0 0
chr1:226407810|226407951 hsa-miR-3141 1 0 0
chr1:226407810|226407951 hsa-miR-3196 1 0 0
chr1:226407810|226407951 hsa-miR-4271 1 0 0
chr1:226407810|226407951 hsa-miR-4467 1 0 0
chr1:226407810|226407951 hsa-miR-4486 1 0 0
chr1:226407810|226407951 hsa-miR-3960 1 0 0
chr1:226407810|226407951 hsa-miR-4660 1 0 0
chr1:226407810|226407951 hsa-miR-4739 1 0 0
chr1:226407810|226407951 hsa-miR-4767 0 1 0
chr1:226407810|226407951 hsa-miR-6133 1 0 0
chr1:226407810|226407951 hsa-miR-8072 1 0 0
chr1:226407810|226407951 hsa-miR-6734-5p 1 0 0
chr1:226407810|226407951 hsa-miR-4731-5p 1 0 0
chr1:226407810|226407951 hsa-miR-7106-5p 1 1 0
chr1:226407810|226407951 hsa-miR-6825-5p 1 1 0
chr1:226407810|226407951 hsa-miR-6894-5p 1 1 0
chr1:226407810|226407951 hsa-miR-25-5p 0 1 0
chr1:226407810|226407951 hsa-miR-6799-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6510-5p 1 0 0
chr1:226407810|226407951 hsa-miR-766-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6515-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6757-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6880-5p 1 0 0
chr1:226407810|226407951 hsa-miR-7847-3p 1 0 0
chr1:226407810|226407951 hsa-miR-6820-5p 1 1 0
chr1:226407810|226407951 hsa-miR-3187-3p 0 1 0
chr1:226407810|226407951 hsa-miR-3605-5p 1 0 0
chr1:226407810|226407951 hsa-miR-3180-3p 1 0 0
chr1:226407810|226407951 hsa-miR-6805-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6798-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6782-5p 1 0 0
chr1:226407810|226407951 hsa-miR-885-3p 1 0 0
chr1:226407810|226407951 hsa-miR-1908-5p 1 0 0
chr1:226407810|226407951 hsa-miR-877-5p 1 0 0
chr1:226407810|226407951 hsa-miR-4787-5p 1 0 0
chr1:226407810|226407951 hsa-miR-149-3p 1 0 0
chr1:226407810|226407951 hsa-miR-6824-5p 1 1 0
chr1:226407810|226407951 hsa-miR-6789-5p 1 0 0
chr1:226407810|226407951 hsa-miR-5010-5p 1 1 0
chr1:226407810|226407951 hsa-miR-6770-3p 1 0 0
chr1:226407810|226407951 hsa-miR-668-5p 0 1 0
chr1:226407810|226407951 hsa-miR-10400-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6769b-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6778-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6787-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6865-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6870-5p 1 0 0
chr1:226407810|226407951 hsa-miR-1343-5p 1 0 0
chr1:226407810|226407951 hsa-miR-3180 1 0 0
chr1:226407810|226407951 hsa-miR-6803-5p 1 0 0
chr1:226407810|226407951 hsa-miR-1249-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6751-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6879-5p 1 0 0
chr1:226407810|226407951 hsa-miR-7111-5p 1 0 0
chr1:226407810|226407951 hsa-miR-4728-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6780b-5p 1 0 0
chr1:226407810|226407951 hsa-miR-10396b-5p 1 0 0
chr1:226407810|226407951 hsa-miR-1237-5p 1 0 0
chr1:226407810|226407951 hsa-miR-328-5p 1 0 0
chr1:226407810|226407951 hsa-miR-4649-5p 1 0 0
chr1:226407810|226407951 hsa-miR-4725-3p 1 0 0
chr1:226407810|226407951 hsa-miR-6729-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6795-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6846-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6883-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6887-5p 1 0 0
chr1:226407810|226407951 hsa-miR-939-5p 1 0 0
chr1:226407810|226407951 hsa-miR-10394-3p 1 1 0
chr1:226407810|226407951 hsa-miR-4665-5p 1 0 0
chr1:226407810|226407951 hsa-miR-4747-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6766-5p 1 0 0
chr1:226407810|226407951 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:226407810|226407951
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence LHHDGHPERVLGDALAAFLARGAPALGVLDSIELIRRLRHPPLAAAK
Nucleotide Sequence CTGCACCATGATGGCCATCCGGAGCGAGTCCTTGGGGATGCTCTCGCTGCATTTCTTGCAAGAGGCGCGCCCGCTCTTGGCGTACTCGACTCGATAGAGCTTATCCGAAGACTCCGCCATCCTCCCCTAGCTGCCGCCAAA
CircID chr1:226407810|226407951
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MMAIRSESLGMLSLHFLQEARPLLAYSTR
Nucleotide Sequence ATGATGGCCATCCGGAGCGAGTCCTTGGGGATGCTCTCGCTGCATTTCTTGCAAGAGGCGCGCCCGCTCTTGGCGTACTCGACTCGATAG
CircID chr1:226407810|226407951
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MAESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQ
Nucleotide Sequence ATGGCGGAGTCTTCGGATAAGCTCTATCGAGTCGAGTACGCCAAGAGCGGGCGCGCCTCTTGCAAGAAATGCAGCGAGAGCATCCCCAAGGACTCGCTCCGGATGGCCATCATGGTGCAG
CircID chr1:226407810|226407951
ORF Type ORF4
Protein Length 46
Nucleotide Length 138
Protein Sequence LAAARGGWRSLRISSIESSTPRAGAPLARNAARASPRTRSGWPSWC
Nucleotide Sequence TTGGCGGCAGCTAGGGGAGGATGGCGGAGTCTTCGGATAAGCTCTATCGAGTCGAGTACGCCAAGAGCGGGCGCGCCTCTTGCAAGAAATGCAGCGAGAGCATCCCCAAGGACTCGCTCCGGATGGCCATCATGGTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab