CircRNA Information

General Information
circRNA Basic Information
CircID chr1:22647271|22647405
Strand +
CircType exon
Host Gene ENSG00000159189.10;
Algorism CIRI2;
Sequence TGACTGGAATTTCTGCTTGTATCTGCCCTCCTCACCTGGCTCTCCAGGGATGCCCATGGGGCCGGGCACCCCTGGCATCCCAGGGGGTCCCATGGGGCCATTTTTCCCAGGATGGCCGGGTAAGCCGGGTTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:22647271|22647405 hsa-miR-185-5p 0 0 1
chr1:22647271|22647405 hsa-miR-185-3p 0 0 1
chr1:22647271|22647405 hsa-miR-381-5p 0 0 1
chr1:22647271|22647405 hsa-miR-381-3p 0 0 1
chr1:22647271|22647405 hsa-miR-589-5p 0 0 1
chr1:22647271|22647405 hsa-miR-589-3p 0 0 1
chr1:22647271|22647405 hsa-miR-300 0 0 1
chr1:22647271|22647405 hsa-miR-125a-3p 1 0 1
chr1:22647271|22647405 hsa-miR-145-5p 0 0 1
chr1:22647271|22647405 hsa-miR-324-5p 0 0 1
chr1:22647271|22647405 hsa-miR-941 0 0 1
chr1:22647271|22647405 hsa-miR-331-3p 0 0 1
chr1:22647271|22647405 hsa-miR-342-5p 0 0 1
chr1:22647271|22647405 hsa-miR-658 1 0 0
chr1:22647271|22647405 hsa-miR-298 1 0 0
chr1:22647271|22647405 hsa-miR-2861 1 0 0
chr1:22647271|22647405 hsa-miR-3132 1 0 0
chr1:22647271|22647405 hsa-miR-3141 1 0 0
chr1:22647271|22647405 hsa-miR-3935 1 0 0
chr1:22647271|22647405 hsa-miR-4651 1 0 0
chr1:22647271|22647405 hsa-miR-4688 1 0 0
chr1:22647271|22647405 hsa-miR-4689 1 0 0
chr1:22647271|22647405 hsa-miR-4706 1 0 0
chr1:22647271|22647405 hsa-miR-4710 1 0 0
chr1:22647271|22647405 hsa-miR-4739 1 0 0
chr1:22647271|22647405 hsa-miR-4779 1 0 0
chr1:22647271|22647405 hsa-miR-5090 1 0 0
chr1:22647271|22647405 hsa-miR-6090 1 0 0
chr1:22647271|22647405 hsa-miR-8089 1 0 0
chr1:22647271|22647405 hsa-miR-504-3p 1 0 0
chr1:22647271|22647405 hsa-miR-6825-5p 1 0 0
chr1:22647271|22647405 hsa-miR-3934-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6089 1 0 0
chr1:22647271|22647405 hsa-miR-4695-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6721-5p 1 0 0
chr1:22647271|22647405 hsa-miR-197-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6827-5p 1 0 0
chr1:22647271|22647405 hsa-miR-486-3p 1 0 0
chr1:22647271|22647405 hsa-miR-1226-5p 1 0 0
chr1:22647271|22647405 hsa-miR-4640-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6771-5p 1 0 0
chr1:22647271|22647405 hsa-miR-149-3p 1 0 0
chr1:22647271|22647405 hsa-miR-3616-3p 1 0 0
chr1:22647271|22647405 hsa-miR-937-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6824-5p 1 0 0
chr1:22647271|22647405 hsa-miR-423-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6816-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6870-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6893-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6743-5p 1 0 0
chr1:22647271|22647405 hsa-miR-11181-3p 1 0 0
chr1:22647271|22647405 hsa-miR-1249-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6780a-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6797-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6879-5p 1 0 0
chr1:22647271|22647405 hsa-miR-7111-5p 1 0 0
chr1:22647271|22647405 hsa-miR-4728-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6780b-5p 1 0 0
chr1:22647271|22647405 hsa-miR-328-5p 1 0 0
chr1:22647271|22647405 hsa-miR-4632-5p 1 0 0
chr1:22647271|22647405 hsa-miR-4649-5p 1 0 0
chr1:22647271|22647405 hsa-miR-4726-5p 1 0 0
chr1:22647271|22647405 hsa-miR-4745-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6729-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6735-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6846-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6848-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6858-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6883-5p 1 0 0
chr1:22647271|22647405 hsa-miR-4436b-3p 1 0 0
chr1:22647271|22647405 hsa-miR-6845-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6885-5p 1 0 0
chr1:22647271|22647405 hsa-miR-939-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6731-5p 1 0 0
chr1:22647271|22647405 hsa-miR-7843-5p 1 0 0
chr1:22647271|22647405 hsa-miR-6891-5p 1 0 0
chr1:22647271|22647405 hsa-miR-541-3p 1 0 0
chr1:22647271|22647405 hsa-miR-6785-5p 1 0 0
chr1:22647271|22647405 hsa-miR-4667-5p 1 0 0
chr1:22647271|22647405 hsa-miR-128-2-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:22647271|22647405
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MEFLLVSALLTWLSRDAHGAGHPWHPRGSHGAIFPRMAG
Nucleotide Sequence CTGGAATTTCTGCTTGTATCTGCCCTCCTCACCTGGCTCTCCAGGGATGCCCATGGGGCCGGGCACCCCTGGCATCCCAGGGGGTCCCATGGGGCCATTTTTCCCAGGATGGCCGGGTAA
CircID chr1:22647271|22647405
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MYLPSSPGSPGMPMGPGTPGIPGGPMGPFFPGWPGKPGS
Nucleotide Sequence TTGTATCTGCCCTCCTCACCTGGCTCTCCAGGGATGCCCATGGGGCCGGGCACCCCTGGCATCCCAGGGGGTCCCATGGGGCCATTTTTCCCAGGATGGCCGGGTAAGCCGGGTTCT
CircID chr1:22647271|22647405
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MALQGCPWGRAPLASQGVPWGHFSQDGRVSRVL
Nucleotide Sequence CTGGCTCTCCAGGGATGCCCATGGGGCCGGGCACCCCTGGCATCCCAGGGGGTCCCATGGGGCCATTTTTCCCAGGATGGCCGGGTAAGCCGGGTTCTC
CircID chr1:22647271|22647405
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS
Nucleotide Sequence ATGGGACCCCCTGGGATGCCAGGGGTGCCCGGCCCCATGGGCATCCCTGGAGAGCCAGGTGAGGAGGGCAGATACAAGCAGAAATTCCAGTCA
CircID chr1:22647271|22647405
ORF Type ORF5
Protein Length 36
Nucleotide Length 108
Protein Sequence MGKMAPWDPLGCQGCPAPWASLESQVRRADTSRNSS
Nucleotide Sequence CTGGGAAAAATGGCCCCATGGGACCCCCTGGGATGCCAGGGGTGCCCGGCCCCATGGGCATCCCTGGAGAGCCAGGTGAGGAGGGCAGATACAAGCAGAAATTCCAGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab