CircRNA Information

General Information
circRNA Basic Information
CircID chr1:228097620|228097940
Strand -
CircType exon
Host Gene ENSG00000143761.12;
Algorism CIRI2;
Sequence AGAGAGCGTGTGAACGAGGCCCGTGAGGAGCTCATGAGGATGCTGGCCGAGGACGAGCTCCGGGATGCTGTCCTCCTGGTGTTCGCCAACAAGCAGGTAGGCGCCCGGGCCAGCCTGGGGAATGTGAGGAGCCAGTGTGGGTTCCGCCTGGTGGTAGGGGTTACTGGAGGCTGGTGGGGCCCCTTTCTCTGTCCTGTGGACAGCCCTTCCCACCAACCCTTCCTTCCCCCAGGACCTCCCCAACGCCATGAATGCGGCCGAGATCACAGACAAGCTGGGGCTGCACTCACTACGCCACAGGAACTGGTACATTCAGGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:228097620|228097940 hsa-miR-23a-5p 0 0 1
chr1:228097620|228097940 hsa-miR-23a-3p 0 0 1
chr1:228097620|228097940 hsa-miR-23b-5p 0 0 1
chr1:228097620|228097940 hsa-miR-23b-3p 0 0 1
chr1:228097620|228097940 hsa-miR-149-5p 0 0 1
chr1:228097620|228097940 hsa-miR-149-3p 0 0 1
chr1:228097620|228097940 hsa-miR-377-5p 0 0 1
chr1:228097620|228097940 hsa-miR-377-3p 0 0 1
chr1:228097620|228097940 hsa-miR-625-5p 0 0 1
chr1:228097620|228097940 hsa-miR-625-3p 0 0 1
chr1:228097620|228097940 hsa-miR-632 0 0 1
chr1:228097620|228097940 hsa-miR-637 0 0 1
chr1:228097620|228097940 hsa-miR-892b 1 0 1
chr1:228097620|228097940 hsa-miR-541-5p 0 0 1
chr1:228097620|228097940 hsa-miR-541-3p 0 0 1
chr1:228097620|228097940 hsa-miR-665 0 0 1
chr1:228097620|228097940 hsa-miR-921 0 0 1
chr1:228097620|228097940 hsa-miR-939-5p 0 0 1
chr1:228097620|228097940 hsa-miR-939-3p 0 0 1
chr1:228097620|228097940 hsa-miR-1226-5p 0 0 1
chr1:228097620|228097940 hsa-miR-1226-3p 0 0 1
chr1:228097620|228097940 hsa-miR-1231 0 0 1
chr1:228097620|228097940 hsa-miR-1203 0 0 1
chr1:228097620|228097940 hsa-miR-1275 0 0 1
chr1:228097620|228097940 hsa-miR-1252-5p 0 0 1
chr1:228097620|228097940 hsa-miR-1252-3p 0 0 1
chr1:228097620|228097940 hsa-miR-1307-5p 0 0 1
chr1:228097620|228097940 hsa-miR-1307-3p 0 0 1
chr1:228097620|228097940 hsa-miR-296-5p 0 0 1
chr1:228097620|228097940 hsa-miR-770-5p 0 0 1
chr1:228097620|228097940 hsa-miR-296-3p 0 0 1
chr1:228097620|228097940 hsa-miR-324-5p 0 0 1
chr1:228097620|228097940 hsa-miR-654-5p 0 0 1
chr1:228097620|228097940 hsa-miR-566 0 0 1
chr1:228097620|228097940 hsa-miR-556-5p 0 0 1
chr1:228097620|228097940 hsa-miR-338-3p 0 0 1
chr1:228097620|228097940 hsa-miR-608 1 0 0
chr1:228097620|228097940 hsa-miR-663a 1 0 0
chr1:228097620|228097940 hsa-miR-762 1 0 0
chr1:228097620|228097940 hsa-miR-663b 1 0 0
chr1:228097620|228097940 hsa-miR-1538 1 0 0
chr1:228097620|228097940 hsa-miR-3176 1 0 0
chr1:228097620|228097940 hsa-miR-3689f 1 0 0
chr1:228097620|228097940 hsa-miR-4634 1 0 0
chr1:228097620|228097940 hsa-miR-4656 1 0 0
chr1:228097620|228097940 hsa-miR-4706 1 0 0
chr1:228097620|228097940 hsa-miR-4739 1 0 0
chr1:228097620|228097940 hsa-miR-4741 1 0 0
chr1:228097620|228097940 hsa-miR-4747-3p 1 0 0
chr1:228097620|228097940 hsa-miR-4700-3p 1 0 0
chr1:228097620|228097940 hsa-miR-3150a-3p 1 0 0
chr1:228097620|228097940 hsa-miR-7106-5p 1 0 0
chr1:228097620|228097940 hsa-miR-4687-3p 1 0 0
chr1:228097620|228097940 hsa-miR-6799-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6768-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6829-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6850-5p 1 0 0
chr1:228097620|228097940 hsa-miR-1229-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6824-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6886-5p 1 0 0
chr1:228097620|228097940 hsa-miR-4707-5p 1 0 0
chr1:228097620|228097940 hsa-miR-1207-5p 1 0 0
chr1:228097620|228097940 hsa-miR-4763-3p 1 0 0
chr1:228097620|228097940 hsa-miR-6812-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6870-5p 1 0 0
chr1:228097620|228097940 hsa-miR-5001-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6756-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6803-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6751-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6763-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6779-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6797-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6879-5p 1 0 0
chr1:228097620|228097940 hsa-miR-7111-5p 1 0 0
chr1:228097620|228097940 hsa-miR-5196-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6780b-5p 1 0 0
chr1:228097620|228097940 hsa-miR-4745-5p 1 0 0
chr1:228097620|228097940 hsa-miR-675-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6858-5p 1 0 0
chr1:228097620|228097940 hsa-miR-1238-5p 1 0 0
chr1:228097620|228097940 hsa-miR-7843-5p 1 0 0
chr1:228097620|228097940 hsa-miR-4716-3p 1 0 0
chr1:228097620|228097940 hsa-miR-3184-5p 1 0 0
chr1:228097620|228097940 hsa-miR-6801-3p 1 0 0
chr1:228097620|228097940 hsa-miR-6810-3p 1 0 0
chr1:228097620|228097940 hsa-miR-10392-3p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:228097620|228097940
ORF Type ORF1
Protein Length 96
Nucleotide Length 288
Protein Sequence MRMLAEDELRDAVLLVFANKQVGARASLGNVRSQCGFRLVVGVTGGWWGPFLCPVDSPSHQPFLPPGPPQRHECGRDHRQAGAALTTPQELVHSGH
Nucleotide Sequence ATGAGGATGCTGGCCGAGGACGAGCTCCGGGATGCTGTCCTCCTGGTGTTCGCCAACAAGCAGGTAGGCGCCCGGGCCAGCCTGGGGAATGTGAGGAGCCAGTGTGGGTTCCGCCTGGTGGTAGGGGTTACTGGAGGCTGGTGGGGCCCCTTTCTCTGTCCTGTGGACAGCCCTTCCCACCAACCCTTCCTTCCCCCAGGACCTCCCCAACGCCATGAATGCGGCCGAGATCACAGACAAGCTGGGGCTGCACTCACTACGCCACAGGAACTGGTACATTCAGGCCAC
CircID chr1:228097620|228097940
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MEAGGAPFSVLWTALPTNPSFPQDLPNAMNAAEITDKLGLHSLRHRNWYIQA
Nucleotide Sequence CTGGAGGCTGGTGGGGCCCCTTTCTCTGTCCTGTGGACAGCCCTTCCCACCAACCCTTCCTTCCCCCAGGACCTCCCCAACGCCATGAATGCGGCCGAGATCACAGACAAGCTGGGGCTGCACTCACTACGCCACAGGAACTGGTACATTCAGGCC
CircID chr1:228097620|228097940
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MVGPLSLSCGQPFPPTLPSPRTSPTP
Nucleotide Sequence CTGGTGGGGCCCCTTTCTCTGTCCTGTGGACAGCCCTTCCCACCAACCCTTCCTTCCCCCAGGACCTCCCCAACGCCATGA
CircID chr1:228097620|228097940
ORF Type ORF4
Protein Length 104
Nucleotide Length 312
Protein Sequence MYQFLWRSECSPSLSVISAAFMALGRSWGKEGLVGRAVHRTEKGAPPASSNPYHQAEPTLAPHIPQAGPGAYLLVGEHQEDSIPELVLGQHPHELLTGLVHTLS
Nucleotide Sequence ATGTACCAGTTCCTGTGGCGTAGTGAGTGCAGCCCCAGCTTGTCTGTGATCTCGGCCGCATTCATGGCGTTGGGGAGGTCCTGGGGGAAGGAAGGGTTGGTGGGAAGGGCTGTCCACAGGACAGAGAAAGGGGCCCCACCAGCCTCCAGTAACCCCTACCACCAGGCGGAACCCACACTGGCTCCTCACATTCCCCAGGCTGGCCCGGGCGCCTACCTGCTTGTTGGCGAACACCAGGAGGACAGCATCCCGGAGCTCGTCCTCGGCCAGCATCCTCATGAGCTCCTCACGGGCCTCGTTCACACGCTCTCT
CircID chr1:228097620|228097940
ORF Type ORF5
Protein Length 67
Nucleotide Length 201
Protein Sequence MSTGQRKGPHQPPVTPTTRRNPHWLLTFPRLARAPTCLLANTRRTASRSSSSASILMSSSRASFTRS
Nucleotide Sequence CTGTCCACAGGACAGAGAAAGGGGCCCCACCAGCCTCCAGTAACCCCTACCACCAGGCGGAACCCACACTGGCTCCTCACATTCCCCAGGCTGGCCCGGGCGCCTACCTGCTTGTTGGCGAACACCAGGAGGACAGCATCCCGGAGCTCGTCCTCGGCCAGCATCCTCATGAGCTCCTCACGGGCCTCGTTCACACGCTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab