CircRNA Information

General Information
circRNA Basic Information
CircID chr1:228145735|228145972
Strand +
CircType exon
Host Gene ENSG00000143774.15;
Algorism CIRI2;
Sequence CCAGCGTTTCCCTTGCAGTCCCGACAGCACTTGAGCCCCAGGATGCAGGCAGCCAGTGAAGCACACCACTGGGAAGGCGCAGGAGCCTACAAGGCGAGGGTTCTCCCAGAAAGAAACACTGTGGCCCAGTTATCAGTACTCAACAGACCCAGGGAAGGGAGACACAGGCACGCAGGACAGCAGGAGTGTGATAACCTCAGGTTCTGTGTGGGGGGGAGTGTGCAAGAGTTCGGACAGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:228145735|228145972 hsa-miR-154-5p 0 0 1
chr1:228145735|228145972 hsa-miR-154-3p 0 0 1
chr1:228145735|228145972 hsa-miR-302a-5p 0 0 1
chr1:228145735|228145972 hsa-miR-302a-3p 0 0 1
chr1:228145735|228145972 hsa-miR-302b-5p 0 0 1
chr1:228145735|228145972 hsa-miR-302b-3p 0 0 1
chr1:228145735|228145972 hsa-miR-302c-5p 0 0 1
chr1:228145735|228145972 hsa-miR-302c-3p 0 0 1
chr1:228145735|228145972 hsa-miR-302d-5p 0 0 1
chr1:228145735|228145972 hsa-miR-302d-3p 0 0 1
chr1:228145735|228145972 hsa-miR-370-5p 0 0 1
chr1:228145735|228145972 hsa-miR-370-3p 0 0 1
chr1:228145735|228145972 hsa-miR-372-5p 0 0 1
chr1:228145735|228145972 hsa-miR-372-3p 0 0 1
chr1:228145735|228145972 hsa-miR-373-5p 0 0 1
chr1:228145735|228145972 hsa-miR-373-3p 0 0 1
chr1:228145735|228145972 hsa-miR-520e-5p 0 0 1
chr1:228145735|228145972 hsa-miR-520e-3p 0 0 1
chr1:228145735|228145972 hsa-miR-520b-5p 0 0 1
chr1:228145735|228145972 hsa-miR-520b-3p 0 0 1
chr1:228145735|228145972 hsa-miR-589-5p 0 0 1
chr1:228145735|228145972 hsa-miR-589-3p 0 0 1
chr1:228145735|228145972 hsa-miR-604 0 0 1
chr1:228145735|228145972 hsa-miR-626 0 0 1
chr1:228145735|228145972 hsa-miR-636 0 0 1
chr1:228145735|228145972 hsa-miR-647 0 0 1
chr1:228145735|228145972 hsa-miR-892b 0 0 1
chr1:228145735|228145972 hsa-miR-1267 0 0 1
chr1:228145735|228145972 hsa-miR-302e 0 0 1
chr1:228145735|228145972 hsa-miR-1278 0 0 1
chr1:228145735|228145972 hsa-miR-1288-5p 0 0 1
chr1:228145735|228145972 hsa-miR-1288-3p 0 0 1
chr1:228145735|228145972 hsa-miR-512-3p 0 0 1
chr1:228145735|228145972 hsa-miR-324-5p 0 0 1
chr1:228145735|228145972 hsa-miR-193a-5p 0 0 1
chr1:228145735|228145972 hsa-miR-483-3p 0 0 1
chr1:228145735|228145972 hsa-miR-520d-3p 0 0 1
chr1:228145735|228145972 hsa-miR-582-3p 0 0 1
chr1:228145735|228145972 hsa-miR-520a-3p 0 0 1
chr1:228145735|228145972 hsa-miR-520c-3p 0 0 1
chr1:228145735|228145972 hsa-miR-1274a 0 0 1
chr1:228145735|228145972 hsa-miR-128 0 0 1
chr1:228145735|228145972 hsa-miR-550 0 0 1
chr1:228145735|228145972 hsa-miR-218 0 0 1
chr1:228145735|228145972 hsa-miR-623 1 0 0
chr1:228145735|228145972 hsa-miR-632 1 0 0
chr1:228145735|228145972 hsa-miR-637 1 0 0
chr1:228145735|228145972 hsa-miR-661 1 0 0
chr1:228145735|228145972 hsa-miR-760 1 0 0
chr1:228145735|228145972 hsa-miR-1539 1 0 0
chr1:228145735|228145972 hsa-miR-544b 1 0 0
chr1:228145735|228145972 hsa-miR-3137 1 0 0
chr1:228145735|228145972 hsa-miR-3196 1 0 0
chr1:228145735|228145972 hsa-miR-4327 1 0 0
chr1:228145735|228145972 hsa-miR-4292 1 0 0
chr1:228145735|228145972 hsa-miR-4440 1 0 0
chr1:228145735|228145972 hsa-miR-4449 1 0 0
chr1:228145735|228145972 hsa-miR-4489 1 0 0
chr1:228145735|228145972 hsa-miR-4507 1 0 0
chr1:228145735|228145972 hsa-miR-4648 1 0 0
chr1:228145735|228145972 hsa-miR-6085 1 0 0
chr1:228145735|228145972 hsa-miR-8052 1 0 0
chr1:228145735|228145972 hsa-miR-8089 1 0 0
chr1:228145735|228145972 hsa-miR-9986 1 0 0
chr1:228145735|228145972 hsa-miR-7155-5p 1 0 0
chr1:228145735|228145972 hsa-miR-4665-3p 1 0 0
chr1:228145735|228145972 hsa-miR-6861-5p 1 0 0
chr1:228145735|228145972 hsa-miR-1915-5p 1 0 0
chr1:228145735|228145972 hsa-miR-656-5p 1 0 0
chr1:228145735|228145972 hsa-miR-6716-3p 1 0 0
chr1:228145735|228145972 hsa-miR-6852-5p 1 0 0
chr1:228145735|228145972 hsa-miR-5088-5p 1 0 0
chr1:228145735|228145972 hsa-miR-4783-3p 1 0 0
chr1:228145735|228145972 hsa-miR-6784-5p 1 0 0
chr1:228145735|228145972 hsa-miR-4640-5p 1 0 0
chr1:228145735|228145972 hsa-miR-3189-3p 1 0 0
chr1:228145735|228145972 hsa-miR-1225-5p 1 0 0
chr1:228145735|228145972 hsa-miR-3120-5p 1 0 0
chr1:228145735|228145972 hsa-miR-937-3p 1 0 0
chr1:228145735|228145972 hsa-miR-4726-5p 1 0 0
chr1:228145735|228145972 hsa-miR-6848-5p 1 0 0
chr1:228145735|228145972 hsa-miR-3199 1 0 0
chr1:228145735|228145972 hsa-miR-365b-5p 1 0 0
chr1:228145735|228145972 hsa-miR-6855-5p 1 0 0
chr1:228145735|228145972 hsa-miR-10398-5p 1 0 0
chr1:228145735|228145972 hsa-miR-6791-5p 1 0 0
chr1:228145735|228145972 hsa-miR-330-5p 1 0 0
chr1:228145735|228145972 hsa-miR-6876-3p 1 0 0
chr1:228145735|228145972 hsa-miR-6764-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:228145735|228145972
ORF Type ORF1
Protein Length 75
Nucleotide Length 225
Protein Sequence MQSRQHLSPRMQAASEAHHWEGAGAYKARVLPERNTVAQLSVLNRPREGRHRHAGQQECDNLRFCVGGSVQEFGQ
Nucleotide Sequence TTGCAGTCCCGACAGCACTTGAGCCCCAGGATGCAGGCAGCCAGTGAAGCACACCACTGGGAAGGCGCAGGAGCCTACAAGGCGAGGGTTCTCCCAGAAAGAAACACTGTGGCCCAGTTATCAGTACTCAACAGACCCAGGGAAGGGAGACACAGGCACGCAGGACAGCAGGAGTGTGATAACCTCAGGTTCTGTGTGGGGGGGAGTGTGCAAGAGTTCGGACAG
CircID chr1:228145735|228145972
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MWPSYQYSTDPGKGDTGTQDSRSVITSGSVWGGVCKSSDS
Nucleotide Sequence CTGTGGCCCAGTTATCAGTACTCAACAGACCCAGGGAAGGGAGACACAGGCACGCAGGACAGCAGGAGTGTGATAACCTCAGGTTCTGTGTGGGGGGGAGTGTGCAAGAGTTCGGACAGT
CircID chr1:228145735|228145972
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MGRRRSLQGEGSPRKKHCGPVISTQQTQGRETQARRTAGV
Nucleotide Sequence CTGGGAAGGCGCAGGAGCCTACAAGGCGAGGGTTCTCCCAGAAAGAAACACTGTGGCCCAGTTATCAGTACTCAACAGACCCAGGGAAGGGAGACACAGGCACGCAGGACAGCAGGAGTGTGA
CircID chr1:228145735|228145972
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MITGPQCFFLGEPSPCRLLRLPSGVLHWLPASWGSSAVGTARETL
Nucleotide Sequence CTGATAACTGGGCCACAGTGTTTCTTTCTGGGAGAACCCTCGCCTTGTAGGCTCCTGCGCCTTCCCAGTGGTGTGCTTCACTGGCTGCCTGCATCCTGGGGCTCAAGTGCTGTCGGGACTGCAAGGGAAACGCTG
CircID chr1:228145735|228145972
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence LSELLHTPPHTEPEVITLLLSCVPVSPFPGSVEY
Nucleotide Sequence CTGTCCGAACTCTTGCACACTCCCCCCCACACAGAACCTGAGGTTATCACACTCCTGCTGTCCTGCGTGCCTGTGTCTCCCTTCCCTGGGTCTGTTGAGTACTGA
CircID chr1:228145735|228145972
ORF Type ORF6
Protein Length 43
Nucleotide Length 129
Protein Sequence MGHSVSFWENPRLVGSCAFPVVCFTGCLHPGAQVLSGLQGKRW
Nucleotide Sequence CTGGGCCACAGTGTTTCTTTCTGGGAGAACCCTCGCCTTGTAGGCTCCTGCGCCTTCCCAGTGGTGTGCTTCACTGGCTGCCTGCATCCTGGGGCTCAAGTGCTGTCGGGACTGCAAGGGAAACGCTGG
CircID chr1:228145735|228145972
ORF Type ORF7
Protein Length 37
Nucleotide Length 114
Protein Sequence MRLSHSCCPACLCLPSLGLLSTDNWATVFLSGRTLAL
Nucleotide Sequence CTGAGGTTATCACACTCCTGCTGTCCTGCGTGCCTGTGTCTCCCTTCCCTGGGTCTGTTGAGTACTGATAACTGGGCCACAGTGTTTCTTTCTGGGAGAACCCTCGCCTTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab