CircRNA Information

General Information
circRNA Basic Information
CircID chr1:228303675|228303938
Strand +
CircType exon
Host Gene ENSG00000154358.18;
Algorism CIRI2;
Sequence CCCTGACAGTGAGTGTAGCTGAGGTTCTCTCCTGCCCGCACACACACAAATACTCTCCAGTGTCCTCCACAGCCAGGCCACGAATCTGCAGCTCACACCTCGTCCCGTCCTGCCTCAGGCTATATCTGTCCCCATCTCTGAGGGTCTCAGACCCCTTCCGCCACTCCACGGGGGCCGCCTTGCTCAGCTCACACTGCAGCACAGCTGTGGCCCCTTCTGTGGCCTCGTGATTTCTCACATCTTCTATGAATCTGGCCGGCAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:228303675|228303938 hsa-miR-122-5p 0 0 1
chr1:228303675|228303938 hsa-miR-122-3p 0 0 1
chr1:228303675|228303938 hsa-miR-185-5p 0 0 1
chr1:228303675|228303938 hsa-miR-185-3p 0 0 1
chr1:228303675|228303938 hsa-miR-376b-5p 0 0 1
chr1:228303675|228303938 hsa-miR-376b-3p 0 0 1
chr1:228303675|228303938 hsa-miR-496 0 0 1
chr1:228303675|228303938 hsa-miR-539-5p 0 0 1
chr1:228303675|228303938 hsa-miR-539-3p 0 0 1
chr1:228303675|228303938 hsa-miR-558 0 0 1
chr1:228303675|228303938 hsa-miR-589-5p 0 0 1
chr1:228303675|228303938 hsa-miR-589-3p 0 0 1
chr1:228303675|228303938 hsa-miR-596 0 0 1
chr1:228303675|228303938 hsa-miR-599 0 0 1
chr1:228303675|228303938 hsa-miR-765 1 0 1
chr1:228303675|228303938 hsa-miR-147b-5p 0 0 1
chr1:228303675|228303938 hsa-miR-147b-3p 0 0 1
chr1:228303675|228303938 hsa-miR-940 0 0 1
chr1:228303675|228303938 hsa-miR-1204 0 1 1
chr1:228303675|228303938 hsa-miR-1208 0 0 1
chr1:228303675|228303938 hsa-miR-1286 1 1 1
chr1:228303675|228303938 hsa-miR-1197 0 0 1
chr1:228303675|228303938 hsa-miR-1827 0 0 1
chr1:228303675|228303938 hsa-miR-769-5p 0 0 1
chr1:228303675|228303938 hsa-miR-576-3p 0 0 1
chr1:228303675|228303938 hsa-miR-376a 0 0 1
chr1:228303675|228303938 hsa-miR-147 0 0 1
chr1:228303675|228303938 hsa-miR-608 1 0 0
chr1:228303675|228303938 hsa-miR-661 1 0 0
chr1:228303675|228303938 hsa-miR-762 1 0 0
chr1:228303675|228303938 hsa-miR-663b 1 0 0
chr1:228303675|228303938 hsa-miR-1268a 1 0 0
chr1:228303675|228303938 hsa-miR-2861 1 0 0
chr1:228303675|228303938 hsa-miR-3137 1 0 0
chr1:228303675|228303938 hsa-miR-3138 1 0 0
chr1:228303675|228303938 hsa-miR-3141 1 0 0
chr1:228303675|228303938 hsa-miR-3154 0 1 0
chr1:228303675|228303938 hsa-miR-3175 1 0 0
chr1:228303675|228303938 hsa-miR-3196 1 0 0
chr1:228303675|228303938 hsa-miR-4293 0 1 0
chr1:228303675|228303938 hsa-miR-4298 1 0 0
chr1:228303675|228303938 hsa-miR-4302 0 1 0
chr1:228303675|228303938 hsa-miR-4306 0 1 0
chr1:228303675|228303938 hsa-miR-4322 0 1 0
chr1:228303675|228303938 hsa-miR-4257 1 1 0
chr1:228303675|228303938 hsa-miR-4329 0 1 0
chr1:228303675|228303938 hsa-miR-3621 1 0 0
chr1:228303675|228303938 hsa-miR-1268b 1 0 0
chr1:228303675|228303938 hsa-miR-4458 1 0 0
chr1:228303675|228303938 hsa-miR-4476 1 0 0
chr1:228303675|228303938 hsa-miR-4486 1 0 0
chr1:228303675|228303938 hsa-miR-4489 1 0 0
chr1:228303675|228303938 hsa-miR-4505 1 0 0
chr1:228303675|228303938 hsa-miR-2392 1 0 0
chr1:228303675|228303938 hsa-miR-4514 1 0 0
chr1:228303675|228303938 hsa-miR-4634 1 0 0
chr1:228303675|228303938 hsa-miR-4656 1 1 0
chr1:228303675|228303938 hsa-miR-4688 1 0 0
chr1:228303675|228303938 hsa-miR-4739 1 0 0
chr1:228303675|228303938 hsa-miR-5090 1 0 0
chr1:228303675|228303938 hsa-miR-5194 1 0 0
chr1:228303675|228303938 hsa-miR-5572 1 0 0
chr1:228303675|228303938 hsa-miR-5690 0 1 0
chr1:228303675|228303938 hsa-miR-5787 1 0 0
chr1:228303675|228303938 hsa-miR-6086 1 0 0
chr1:228303675|228303938 hsa-miR-6132 1 0 0
chr1:228303675|228303938 hsa-miR-6133 1 0 0
chr1:228303675|228303938 hsa-miR-7974 0 1 0
chr1:228303675|228303938 hsa-miR-8080 1 0 0
chr1:228303675|228303938 hsa-miR-8089 1 0 0
chr1:228303675|228303938 hsa-miR-12119 1 0 0
chr1:228303675|228303938 hsa-miR-17-3p 0 1 0
chr1:228303675|228303938 hsa-miR-4433b-3p 1 0 0
chr1:228303675|228303938 hsa-miR-128-1-5p 0 1 0
chr1:228303675|228303938 hsa-miR-504-3p 1 0 0
chr1:228303675|228303938 hsa-miR-6747-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6765-5p 1 1 0
chr1:228303675|228303938 hsa-miR-6894-5p 1 0 0
chr1:228303675|228303938 hsa-miR-216a-5p 0 1 0
chr1:228303675|228303938 hsa-miR-4687-3p 1 0 0
chr1:228303675|228303938 hsa-miR-10b-3p 0 1 0
chr1:228303675|228303938 hsa-miR-6728-5p 1 0 0
chr1:228303675|228303938 hsa-miR-766-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6833-5p 1 0 0
chr1:228303675|228303938 hsa-miR-5187-5p 1 0 0
chr1:228303675|228303938 hsa-miR-7114-5p 0 1 0
chr1:228303675|228303938 hsa-miR-6089 1 1 0
chr1:228303675|228303938 hsa-miR-6757-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6880-5p 1 0 0
chr1:228303675|228303938 hsa-miR-7847-3p 1 1 0
chr1:228303675|228303938 hsa-miR-6867-5p 0 1 0
chr1:228303675|228303938 hsa-miR-6744-5p 1 0 0
chr1:228303675|228303938 hsa-miR-4722-5p 1 0 0
chr1:228303675|228303938 hsa-miR-3064-5p 1 1 0
chr1:228303675|228303938 hsa-miR-7154-3p 1 0 0
chr1:228303675|228303938 hsa-miR-6727-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6721-5p 0 1 0
chr1:228303675|228303938 hsa-miR-7845-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6787-3p 0 1 0
chr1:228303675|228303938 hsa-miR-6742-5p 1 0 0
chr1:228303675|228303938 hsa-miR-3151-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6796-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6805-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6782-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6514-5p 1 0 0
chr1:228303675|228303938 hsa-miR-4793-3p 1 0 0
chr1:228303675|228303938 hsa-miR-6810-5p 1 1 0
chr1:228303675|228303938 hsa-miR-5008-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6786-5p 1 0 0
chr1:228303675|228303938 hsa-miR-7109-5p 1 0 0
chr1:228303675|228303938 hsa-miR-1226-5p 1 0 0
chr1:228303675|228303938 hsa-miR-1228-5p 1 0 0
chr1:228303675|228303938 hsa-let-7b-5p 1 0 0
chr1:228303675|228303938 hsa-miR-92b-5p 1 1 0
chr1:228303675|228303938 hsa-miR-485-5p 1 0 0
chr1:228303675|228303938 hsa-miR-3160-3p 0 1 0
chr1:228303675|228303938 hsa-miR-149-3p 1 0 0
chr1:228303675|228303938 hsa-miR-937-5p 1 0 0
chr1:228303675|228303938 hsa-miR-3162-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6802-5p 1 0 0
chr1:228303675|228303938 hsa-miR-574-5p 1 0 0
chr1:228303675|228303938 hsa-miR-7112-5p 0 1 0
chr1:228303675|228303938 hsa-miR-4708-3p 0 1 0
chr1:228303675|228303938 hsa-miR-3191-3p 1 0 0
chr1:228303675|228303938 hsa-let-7e-5p 1 0 0
chr1:228303675|228303938 hsa-miR-616-3p 1 0 0
chr1:228303675|228303938 hsa-miR-6752-3p 0 1 0
chr1:228303675|228303938 hsa-miR-4717-5p 0 1 0
chr1:228303675|228303938 hsa-miR-3179 0 1 0
chr1:228303675|228303938 hsa-miR-1207-5p 1 0 0
chr1:228303675|228303938 hsa-miR-4763-3p 1 0 0
chr1:228303675|228303938 hsa-miR-6812-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6893-5p 1 0 0
chr1:228303675|228303938 hsa-miR-5001-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6737-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6743-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6752-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6754-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6756-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6769a-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6815-5p 1 1 0
chr1:228303675|228303938 hsa-miR-6819-5p 1 0 0
chr1:228303675|228303938 hsa-miR-7107-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6763-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6774-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6797-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6808-5p 1 1 0
chr1:228303675|228303938 hsa-miR-6879-5p 1 0 0
chr1:228303675|228303938 hsa-miR-7111-5p 1 0 0
chr1:228303675|228303938 hsa-miR-3620-5p 1 1 0
chr1:228303675|228303938 hsa-miR-4728-5p 1 0 0
chr1:228303675|228303938 hsa-miR-5196-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6836-5p 1 0 0
chr1:228303675|228303938 hsa-miR-328-5p 1 0 0
chr1:228303675|228303938 hsa-miR-449c-5p 1 0 0
chr1:228303675|228303938 hsa-miR-4649-5p 1 1 0
chr1:228303675|228303938 hsa-miR-4726-5p 1 0 0
chr1:228303675|228303938 hsa-miR-4749-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6729-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6777-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6794-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6795-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6846-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6848-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6858-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6887-5p 1 0 0
chr1:228303675|228303938 hsa-miR-4436b-3p 1 0 0
chr1:228303675|228303938 hsa-miR-6831-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6845-5p 0 1 0
chr1:228303675|228303938 hsa-miR-4769-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6511a-5p 1 0 0
chr1:228303675|228303938 hsa-miR-4665-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6855-5p 1 0 0
chr1:228303675|228303938 hsa-miR-3679-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6785-5p 1 0 0
chr1:228303675|228303938 hsa-miR-4667-5p 1 0 0
chr1:228303675|228303938 hsa-miR-3184-5p 0 1 0
chr1:228303675|228303938 hsa-miR-6791-5p 1 0 0
chr1:228303675|228303938 hsa-miR-6529-5p 0 1 0
chr1:228303675|228303938 hsa-miR-6504-5p 0 1 0
chr1:228303675|228303938 hsa-miR-548b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:228303675|228303938
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MRFSPARTHTNTLQCPPQPGHESAAHTSSRPASGYICPHL
Nucleotide Sequence CTGAGGTTCTCTCCTGCCCGCACACACACAAATACTCTCCAGTGTCCTCCACAGCCAGGCCACGAATCTGCAGCTCACACCTCGTCCCGTCCTGCCTCAGGCTATATCTGTCCCCATCTCTGA
CircID chr1:228303675|228303938
ORF Type ORF2
Protein Length 77
Nucleotide Length 231
Protein Sequence MPAHTQILSSVLHSQATNLQLTPRPVLPQAISVPISEGLRPLPPLHGGRLAQLTLQHSCGPFCGLVISHIFYESGRQ
Nucleotide Sequence CTGCCCGCACACACACAAATACTCTCCAGTGTCCTCCACAGCCAGGCCACGAATCTGCAGCTCACACCTCGTCCCGTCCTGCCTCAGGCTATATCTGTCCCCATCTCTGAGGGTCTCAGACCCCTTCCGCCACTCCACGGGGGCCGCCTTGCTCAGCTCACACTGCAGCACAGCTGTGGCCCCTTCTGTGGCCTCGTGATTTCTCACATCTTCTATGAATCTGGCCGGCAG
CircID chr1:228303675|228303938
ORF Type ORF3
Protein Length 75
Nucleotide Length 228
Protein Sequence LTVSVAEVLSCPHTHKYSPVSSTARPRICSSHLVPSCLRLYLSPSLRVSDPFRHSTGAALLSSHCSTAVAPSVAS
Nucleotide Sequence CTGACAGTGAGTGTAGCTGAGGTTCTCTCCTGCCCGCACACACACAAATACTCTCCAGTGTCCTCCACAGCCAGGCCACGAATCTGCAGCTCACACCTCGTCCCGTCCTGCCTCAGGCTATATCTGTCCCCATCTCTGAGGGTCTCAGACCCCTTCCGCCACTCCACGGGGGCCGCCTTGCTCAGCTCACACTGCAGCACAGCTGTGGCCCCTTCTGTGGCCTCGTGA
CircID chr1:228303675|228303938
ORF Type ORF4
Protein Length 87
Nucleotide Length 261
Protein Sequence LPARFIEDVRNHEATEGATAVLQCELSKAAPVEWRKGSETLRDGDRYSLRQDGTRCELQIRGLAVEDTGEYLCVCGQERTSATLTVR
Nucleotide Sequence CTGCCGGCCAGATTCATAGAAGATGTGAGAAATCACGAGGCCACAGAAGGGGCCACAGCTGTGCTGCAGTGTGAGCTGAGCAAGGCGGCCCCCGTGGAGTGGCGGAAGGGGTCTGAGACCCTCAGAGATGGGGACAGATATAGCCTGAGGCAGGACGGGACGAGGTGTGAGCTGCAGATTCGTGGCCTGGCTGTGGAGGACACTGGAGAGTATTTGTGTGTGTGCGGGCAGGAGAGAACCTCAGCTACACTCACTGTCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab