CircNet

General Information

circRNA Basic Information

CircID	chr1:228374314\|228374752
Strand	+
CircType	Non-Repeat
Host Gene	ENSG00000154358.20;
Algorism	find_circ;CIRI2;DCC;
Sequence	CGCCGACATTCCTAAGGGAGCTCTCAGATGAGACTGTGGTCCTGGGCCAGTCAGTGACACTGGCCTGCCAGGTGTCAGCCCAGCCAGCTGCCCAGGCCACCTGGAGCAAAGACGGAGCCCCCCTGGAGAGCAGCAGCCGTGTCCTCATCTCTGCCACCCTCAAGAACTTCCAGCTTCTGACCATCCTGGTGGTGGTGGCTGAGGACCTGGGTGTGTACACCTGCAGCGTGAGCAATGCGCTGGGGACAGTGACCACCACGGGCGTCCTCCGGAAGGCAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr1:228374314\|228374752	hsa-miR-143-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr1:228374314\|228374752
ORF Type	ORF1
Protein Length	61
Nucleotide Length	183
Protein Sequence	MVRSWKFLRVAEMRTRLLLSRGAPSLLQVAWAAGWADTWQASVTDWPRTTVSSESSLRNVG
Nucleotide Sequence	ATGGTCAGAAGCTGGAAGTTCTTGAGGGTGGCAGAGATGAGGACACGGCTGCTGCTCTCCAGGGGGGCTCCGTCTTTGCTCCAGGTGGCCTGGGCAGCTGGCTGGGCTGACACCTGGCAGGCCAGTGTCACTGACTGGCCCAGGACCACAGTCTCATCTGAGAGCTCCCTTAGGAATGTCGGC

CircID	chr1:228374314\|228374752
ORF Type	ORF2
Protein Length	81
Nucleotide Length	243
Protein Sequence	VVLGQSVTLACQVSAQPAAQATWSKDGAPLESSSRVLISATLKNFQLLTILVVVAEDLGVYTCSVSNALGTVTTTGVLRKA
Nucleotide Sequence	GTGGTCCTGGGCCAGTCAGTGACACTGGCCTGCCAGGTGTCAGCCCAGCCAGCTGCCCAGGCCACCTGGAGCAAAGACGGAGCCCCCCTGGAGAGCAGCAGCCGTGTCCTCATCTCTGCCACCCTCAAGAACTTCCAGCTTCTGACCATCCTGGTGGTGGTGGCTGAGGACCTGGGTGTGTACACCTGCAGCGTGAGCAATGCGCTGGGGACAGTGACCACCACGGGCGTCCTCCGGAAGGCA

CircID	chr1:228374314\|228374752
ORF Type	ORF3
Protein Length	68
Nucleotide Length	204
Protein Sequence	CLPEDARGGHCPQRIAHAAGVHTQVLSHHHQDGQKLEVLEGGRDEDTAAALQGGSVFAPGGLGSWLG*
Nucleotide Sequence	TGCCTTCCGGAGGACGCCCGTGGTGGTCACTGTCCCCAGCGCATTGCTCACGCTGCAGGTGTACACACCCAGGTCCTCAGCCACCACCACCAGGATGGTCAGAAGCTGGAAGTTCTTGAGGGTGGCAGAGATGAGGACACGGCTGCTGCTCTCCAGGGGGGCTCCGTCTTTGCTCCAGGTGGCCTGGGCAGCTGGCTGGGCTGA

CircID	chr1:228374314\|228374752
ORF Type	ORF4
Protein Length	57
Nucleotide Length	171
Protein Sequence	DCGPGPVSDTGLPGVSPASCPGHLEQRRSPPGEQQPCPHLCHPQELPASDHPGGGG*
Nucleotide Sequence	GACTGTGGTCCTGGGCCAGTCAGTGACACTGGCCTGCCAGGTGTCAGCCCAGCCAGCTGCCCAGGCCACCTGGAGCAAAGACGGAGCCCCCCTGGAGAGCAGCAGCCGTGTCCTCATCTCTGCCACCCTCAAGAACTTCCAGCTTCTGACCATCCTGGTGGTGGTGGCTGA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr1:228374314\|228374752	FUS	4	6	1
chr1:228374314\|228374752	PRPF8	1	5	0
chr1:228374314\|228374752	TAF15	1	1	0
chr1:228374314\|228374752	FMR1	2	3	3
chr1:228374314\|228374752	SRSF1	2	2	1
chr1:228374314\|228374752	NOP58	3	2	0
chr1:228374314\|228374752	U2AF2	2	0	0
chr1:228374314\|228374752	HNRNPK	3	1	0
chr1:228374314\|228374752	HNRNPM	0	1	0
chr1:228374314\|228374752	PTBP1	0	1	0
chr1:228374314\|228374752	TRA2A	0	1	1
chr1:228374314\|228374752	LARP7	1	0	0
chr1:228374314\|228374752	SMNDC1	2	2	0
chr1:228374314\|228374752	YWHAG	0	1	0
chr1:228374314\|228374752	FXR1	1	0	2
chr1:228374314\|228374752	FXR2	3	1	2
chr1:228374314\|228374752	SND1	1	0	0
chr1:228374314\|228374752	IGF2BP2	0	1	0
chr1:228374314\|228374752	GTF2F1	0	1	0
chr1:228374314\|228374752	EIF4G2	0	1	0
chr1:228374314\|228374752	DDX42	0	2	0
chr1:228374314\|228374752	SAFB2	0	0	1
chr1:228374314\|228374752	XRN2	0	3	0
chr1:228374314\|228374752	EIF4A3	4	2	2
chr1:228374314\|228374752	FBL	2	2	0

CircRNA Information