CircRNA Information

General Information
circRNA Basic Information
CircID chr1:228494112|228494234
Strand -
CircType exon
Host Gene ENSG00000168159.10;
Algorism CIRI2;
Sequence CTGTGCCCGTCCCTTCCTGAAGTCCTAGCCACAGCCCATCCTCCATGAGTCCCGGCAGCTCTGGGTCATGCCCTTCCCTGGTCACCCATCTGCCCCTCACCTCGTCATCCAGGGACCCAGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:228494112|228494234 hsa-miR-22-5p 0 0 1
chr1:228494112|228494234 hsa-miR-22-3p 0 0 1
chr1:228494112|228494234 hsa-miR-558 0 0 1
chr1:228494112|228494234 hsa-miR-765 1 0 1
chr1:228494112|228494234 hsa-miR-873-5p 0 0 1
chr1:228494112|228494234 hsa-miR-873-3p 0 0 1
chr1:228494112|228494234 hsa-miR-1255a 0 0 1
chr1:228494112|228494234 hsa-miR-1262 0 0 1
chr1:228494112|228494234 hsa-miR-486-3p 0 1 1
chr1:228494112|228494234 hsa-miR-423-5p 1 1 1
chr1:228494112|228494234 hsa-miR-490-5p 0 0 1
chr1:228494112|228494234 hsa-miR-1255b 0 0 1
chr1:228494112|228494234 hsa-miR-604 1 0 0
chr1:228494112|228494234 hsa-miR-661 1 0 0
chr1:228494112|228494234 hsa-miR-762 1 0 0
chr1:228494112|228494234 hsa-miR-1275 1 0 0
chr1:228494112|228494234 hsa-miR-3131 1 0 0
chr1:228494112|228494234 hsa-miR-3132 1 0 0
chr1:228494112|228494234 hsa-miR-4253 0 1 0
chr1:228494112|228494234 hsa-miR-3936 1 0 0
chr1:228494112|228494234 hsa-miR-4443 1 0 0
chr1:228494112|228494234 hsa-miR-4476 0 1 0
chr1:228494112|228494234 hsa-miR-4497 1 0 0
chr1:228494112|228494234 hsa-miR-4498 1 0 0
chr1:228494112|228494234 hsa-miR-4505 1 0 0
chr1:228494112|228494234 hsa-miR-4507 1 0 0
chr1:228494112|228494234 hsa-miR-4525 1 0 0
chr1:228494112|228494234 hsa-miR-4534 1 0 0
chr1:228494112|228494234 hsa-miR-1587 1 1 0
chr1:228494112|228494234 hsa-miR-4656 1 0 0
chr1:228494112|228494234 hsa-miR-4674 1 0 0
chr1:228494112|228494234 hsa-miR-4675 1 1 0
chr1:228494112|228494234 hsa-miR-4688 1 1 0
chr1:228494112|228494234 hsa-miR-4689 1 0 0
chr1:228494112|228494234 hsa-miR-4710 1 1 0
chr1:228494112|228494234 hsa-miR-4739 1 0 0
chr1:228494112|228494234 hsa-miR-4741 1 0 0
chr1:228494112|228494234 hsa-miR-5090 1 1 0
chr1:228494112|228494234 hsa-miR-5194 1 0 0
chr1:228494112|228494234 hsa-miR-5787 1 0 0
chr1:228494112|228494234 hsa-miR-6085 1 0 0
chr1:228494112|228494234 hsa-miR-6086 1 0 0
chr1:228494112|228494234 hsa-miR-9500 0 1 0
chr1:228494112|228494234 hsa-miR-12128 1 1 0
chr1:228494112|228494234 hsa-miR-6734-5p 1 1 0
chr1:228494112|228494234 hsa-miR-6747-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6861-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6825-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6894-5p 1 1 0
chr1:228494112|228494234 hsa-miR-4687-3p 1 0 0
chr1:228494112|228494234 hsa-miR-125a-3p 1 0 0
chr1:228494112|228494234 hsa-miR-6799-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6728-5p 1 0 0
chr1:228494112|228494234 hsa-miR-3692-5p 1 0 0
chr1:228494112|228494234 hsa-miR-766-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6515-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6757-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6880-5p 1 0 0
chr1:228494112|228494234 hsa-miR-7847-3p 1 0 0
chr1:228494112|228494234 hsa-miR-6744-5p 0 1 0
chr1:228494112|228494234 hsa-miR-7154-3p 1 0 0
chr1:228494112|228494234 hsa-miR-7160-5p 1 0 0
chr1:228494112|228494234 hsa-miR-4474-3p 0 1 0
chr1:228494112|228494234 hsa-miR-23b-5p 1 1 0
chr1:228494112|228494234 hsa-miR-197-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6776-5p 1 0 0
chr1:228494112|228494234 hsa-miR-7108-5p 1 0 0
chr1:228494112|228494234 hsa-miR-3605-5p 0 1 0
chr1:228494112|228494234 hsa-miR-3151-5p 1 0 0
chr1:228494112|228494234 hsa-miR-3180-3p 1 0 0
chr1:228494112|228494234 hsa-miR-6748-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6793-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6829-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6732-5p 1 0 0
chr1:228494112|228494234 hsa-miR-23a-5p 1 1 0
chr1:228494112|228494234 hsa-miR-1224-5p 1 0 0
chr1:228494112|228494234 hsa-miR-3126-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6786-5p 1 0 0
chr1:228494112|228494234 hsa-miR-5088-5p 1 0 0
chr1:228494112|228494234 hsa-miR-7109-5p 1 0 0
chr1:228494112|228494234 hsa-miR-1226-5p 1 0 0
chr1:228494112|228494234 hsa-miR-1229-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6784-5p 1 0 0
chr1:228494112|228494234 hsa-miR-4640-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6753-5p 0 1 0
chr1:228494112|228494234 hsa-miR-92b-5p 1 1 0
chr1:228494112|228494234 hsa-miR-3202 0 1 0
chr1:228494112|228494234 hsa-miR-7854-3p 1 1 0
chr1:228494112|228494234 hsa-miR-4743-5p 1 0 0
chr1:228494112|228494234 hsa-miR-149-3p 0 1 0
chr1:228494112|228494234 hsa-miR-6717-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6800-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6802-5p 1 0 0
chr1:228494112|228494234 hsa-miR-1207-5p 1 0 0
chr1:228494112|228494234 hsa-miR-1233-5p 1 0 0
chr1:228494112|228494234 hsa-miR-4763-3p 1 0 0
chr1:228494112|228494234 hsa-miR-6769b-5p 1 1 0
chr1:228494112|228494234 hsa-miR-6787-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6816-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6870-5p 1 0 0
chr1:228494112|228494234 hsa-miR-3180 1 0 0
chr1:228494112|228494234 hsa-miR-5001-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6743-5p 1 1 0
chr1:228494112|228494234 hsa-miR-6756-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6813-5p 1 0 0
chr1:228494112|228494234 hsa-miR-1249-5p 1 0 0
chr1:228494112|228494234 hsa-miR-3620-5p 1 1 0
chr1:228494112|228494234 hsa-miR-5196-5p 1 1 0
chr1:228494112|228494234 hsa-miR-6780b-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6862-5p 0 1 0
chr1:228494112|228494234 hsa-miR-10396b-5p 1 0 0
chr1:228494112|228494234 hsa-miR-328-5p 1 1 0
chr1:228494112|228494234 hsa-miR-4632-5p 1 0 0
chr1:228494112|228494234 hsa-miR-4649-5p 1 0 0
chr1:228494112|228494234 hsa-miR-4685-5p 1 0 0
chr1:228494112|228494234 hsa-miR-4701-3p 1 1 0
chr1:228494112|228494234 hsa-miR-4749-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6729-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6735-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6738-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6846-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6848-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6858-5p 1 0 0
chr1:228494112|228494234 hsa-miR-6883-5p 1 0 0
chr1:228494112|228494234 hsa-miR-365a-5p 1 1 0
chr1:228494112|228494234 hsa-miR-365b-5p 1 0 0
chr1:228494112|228494234 hsa-miR-3940-5p 1 0 0
chr1:228494112|228494234 hsa-miR-1914-3p 1 0 0
chr1:228494112|228494234 hsa-miR-6736-5p 1 0 0
chr1:228494112|228494234 hsa-miR-3679-5p 1 0 0
chr1:228494112|228494234 hsa-miR-4747-5p 0 1 0
chr1:228494112|228494234 hsa-miR-6876-5p 0 1 0
chr1:228494112|228494234 hsa-miR-6785-5p 1 0 0
chr1:228494112|228494234 hsa-miR-3184-5p 1 1 0
chr1:228494112|228494234 hsa-miR-6791-5p 1 0 0
chr1:228494112|228494234 hsa-miR-10400-3p 1 0 0
chr1:228494112|228494234 hsa-miR-1295b-5p 0 1 0
chr1:228494112|228494234 hsa-miR-6797-3p 0 1 0
chr1:228494112|228494234 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:228494112|228494234
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MSPGSSGSCPSLVTHLPLTSSSRDPD
Nucleotide Sequence ATGAGTCCCGGCAGCTCTGGGTCATGCCCTTCCCTGGTCACCCATCTGCCCCTCACCTCGTCATCCAGGGACCCAGAC
CircID chr1:228494112|228494234
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MDDEVRGRWVTREGHDPELPGLMEDGLWLGLQEGTGT
Nucleotide Sequence CTGGATGACGAGGTGAGGGGCAGATGGGTGACCAGGGAAGGGCATGACCCAGAGCTGCCGGGACTCATGGAGGATGGGCTGTGGCTAGGACTTCAGGAAGGGACGGGCACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab