CircRNA Information

General Information
circRNA Basic Information
CircID chr1:23092400|23092663
Strand +
CircType exon
Host Gene ENSG00000169641.12;
Algorism CIRI2;
Sequence CTCCTCTGAGACTGTCTTTGGCAAGAGGGGACACGTGCTTGGCAACGGAAGTCAAGTAACTCAGGCTGCAAACTCTGGCTGTTCTAAGGCCATTGGAGCCCTGGCCTCATCTCGAAGATCCTCCTCAGAAGGGCTCTCTAAAGGCAAAAAGGCTGCCAATGGCCTTGAGGCTGATAACAGTTGCCCGAATTCCAAGGCTCCTGTTCTATCGAAGTATCCTTATAGCTGTAGAAGCCAAGAGAACATCCTTCAGGGATTTTCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:23092400|23092663 hsa-miR-143-5p 0 0 1
chr1:23092400|23092663 hsa-miR-143-3p 0 0 1
chr1:23092400|23092663 hsa-miR-605-5p 0 0 1
chr1:23092400|23092663 hsa-miR-605-3p 0 0 1
chr1:23092400|23092663 hsa-miR-617 0 0 1
chr1:23092400|23092663 hsa-miR-1301-5p 0 0 1
chr1:23092400|23092663 hsa-miR-1301-3p 0 0 1
chr1:23092400|23092663 hsa-miR-1237-5p 0 0 1
chr1:23092400|23092663 hsa-miR-1237-3p 0 0 1
chr1:23092400|23092663 hsa-miR-1303 0 0 1
chr1:23092400|23092663 hsa-miR-1265 0 0 1
chr1:23092400|23092663 hsa-miR-1252-5p 0 0 1
chr1:23092400|23092663 hsa-miR-1252-3p 0 0 1
chr1:23092400|23092663 hsa-miR-139-5p 0 0 1
chr1:23092400|23092663 hsa-miR-129-5p 0 0 1
chr1:23092400|23092663 hsa-miR-885-3p 0 0 1
chr1:23092400|23092663 hsa-miR-361-5p 0 0 1
chr1:23092400|23092663 hsa-miR-125a-5p 0 0 1
chr1:23092400|23092663 hsa-miR-1233 0 0 1
chr1:23092400|23092663 hsa-miR-125b 0 0 1
chr1:23092400|23092663 hsa-miR-129-3p 0 0 1
chr1:23092400|23092663 hsa-miR-612 1 0 0
chr1:23092400|23092663 hsa-miR-2117 0 1 0
chr1:23092400|23092663 hsa-miR-3657 0 1 0
chr1:23092400|23092663 hsa-miR-3909 1 0 0
chr1:23092400|23092663 hsa-miR-4682 0 1 0
chr1:23092400|23092663 hsa-miR-4689 1 0 0
chr1:23092400|23092663 hsa-miR-4739 1 0 0
chr1:23092400|23092663 hsa-miR-6088 0 1 0
chr1:23092400|23092663 hsa-miR-6860 1 0 0
chr1:23092400|23092663 hsa-miR-8089 1 0 0
chr1:23092400|23092663 hsa-miR-12119 1 1 0
chr1:23092400|23092663 hsa-miR-15a-3p 0 1 0
chr1:23092400|23092663 hsa-miR-6734-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6765-5p 1 0 0
chr1:23092400|23092663 hsa-miR-671-5p 1 0 0
chr1:23092400|23092663 hsa-miR-3150a-3p 1 1 0
chr1:23092400|23092663 hsa-miR-6861-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6825-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6894-5p 1 1 0
chr1:23092400|23092663 hsa-miR-6822-3p 0 1 0
chr1:23092400|23092663 hsa-miR-6089 1 0 0
chr1:23092400|23092663 hsa-miR-7847-3p 1 0 0
chr1:23092400|23092663 hsa-miR-4695-5p 1 0 0
chr1:23092400|23092663 hsa-miR-4753-5p 0 1 0
chr1:23092400|23092663 hsa-miR-4677-5p 0 1 0
chr1:23092400|23092663 hsa-miR-3180-3p 1 0 0
chr1:23092400|23092663 hsa-miR-6827-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6798-5p 1 0 0
chr1:23092400|23092663 hsa-miR-3150b-3p 1 0 0
chr1:23092400|23092663 hsa-miR-6774-3p 1 1 0
chr1:23092400|23092663 hsa-miR-345-3p 0 1 0
chr1:23092400|23092663 hsa-miR-1229-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6771-5p 1 0 0
chr1:23092400|23092663 hsa-miR-877-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6501-5p 0 1 0
chr1:23092400|23092663 hsa-miR-3922-5p 0 1 0
chr1:23092400|23092663 hsa-miR-4773 1 1 0
chr1:23092400|23092663 hsa-miR-1296-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6886-3p 1 0 0
chr1:23092400|23092663 hsa-miR-670-5p 0 1 0
chr1:23092400|23092663 hsa-miR-6819-5p 1 0 0
chr1:23092400|23092663 hsa-miR-11181-3p 1 0 0
chr1:23092400|23092663 hsa-miR-6763-5p 1 0 0
chr1:23092400|23092663 hsa-miR-7111-5p 1 0 0
chr1:23092400|23092663 hsa-miR-3127-3p 1 0 0
chr1:23092400|23092663 hsa-miR-4685-5p 0 1 0
chr1:23092400|23092663 hsa-miR-6738-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6794-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6858-5p 1 1 0
chr1:23092400|23092663 hsa-miR-4758-5p 1 0 0
chr1:23092400|23092663 hsa-miR-4700-5p 1 0 0
chr1:23092400|23092663 hsa-miR-4747-5p 1 0 0
chr1:23092400|23092663 hsa-miR-6762-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:23092400|23092663
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MASSRRSSSEGLSKGKKAANGLEADNSCPNSKAPVLSKYPYSCRSQENILQGFS
Nucleotide Sequence CTGGCCTCATCTCGAAGATCCTCCTCAGAAGGGCTCTCTAAAGGCAAAAAGGCTGCCAATGGCCTTGAGGCTGATAACAGTTGCCCGAATTCCAAGGCTCCTGTTCTATCGAAGTATCCTTATAGCTGTAGAAGCCAAGAGAACATCCTTCAGGGATTTTCA
CircID chr1:23092400|23092663
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence MQTLAVLRPLEPWPHLEDPPQKGSLKAKRLPMALRLITVARIPRLLFYRSILIAVEAKRTSFRDFQ
Nucleotide Sequence CTGCAAACTCTGGCTGTTCTAAGGCCATTGGAGCCCTGGCCTCATCTCGAAGATCCTCCTCAGAAGGGCTCTCTAAAGGCAAAAAGGCTGCCAATGGCCTTGAGGCTGATAACAGTTGCCCGAATTCCAAGGCTCCTGTTCTATCGAAGTATCCTTATAGCTGTAGAAGCCAAGAGAACATCCTTCAGGGATTTTCAA
CircID chr1:23092400|23092663
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MEFGQLLSASRPLAAFLPLESPSEEDLRDEARAPMALEQPEFAA
Nucleotide Sequence TTGGAATTCGGGCAACTGTTATCAGCCTCAAGGCCATTGGCAGCCTTTTTGCCTTTAGAGAGCCCTTCTGAGGAGGATCTTCGAGATGAGGCCAGGGCTCCAATGGCCTTAGAACAGCCAGAGTTTGCAGCCTGA
CircID chr1:23092400|23092663
ORF Type ORF4
Protein Length 41
Nucleotide Length 126
Protein Sequence LKIPEGCSLGFYSYKDTSIEQEPWNSGNCYQPQGHWQPFCL
Nucleotide Sequence TTGAAAATCCCTGAAGGATGTTCTCTTGGCTTCTACAGCTATAAGGATACTTCGATAGAACAGGAGCCTTGGAATTCGGGCAACTGTTATCAGCCTCAAGGCCATTGGCAGCCTTTTTGCCTTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab