CircRNA Information

General Information
circRNA Basic Information
CircID chr1:23787448|23787606
Strand +
CircType exon
Host Gene ENSG00000057757.8;
Algorism CIRI2;
Sequence CCAATTTCCACAGCGCCCTAGAGAACCACGATGGTCCCCTGGCACCTACACAACCCTCCCAGTGGTGTCGTATCTTCCGTAGGCCAGGTTTCTGCAGCAAGCCCCAAAGACAAAGCTTGGCAGAGGCTGTGGCAGCCAACTCTCTCTGGAGCCTCATCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:23787448|23787606 hsa-miR-511-5p 0 0 1
chr1:23787448|23787606 hsa-miR-511-3p 0 0 1
chr1:23787448|23787606 hsa-miR-571 0 0 1
chr1:23787448|23787606 hsa-miR-604 0 0 1
chr1:23787448|23787606 hsa-miR-647 0 0 1
chr1:23787448|23787606 hsa-miR-298 0 0 1
chr1:23787448|23787606 hsa-miR-1251-5p 0 0 1
chr1:23787448|23787606 hsa-miR-1251-3p 0 0 1
chr1:23787448|23787606 hsa-miR-1255a 0 0 1
chr1:23787448|23787606 hsa-miR-296-3p 0 0 1
chr1:23787448|23787606 hsa-miR-485-5p 0 0 1
chr1:23787448|23787606 hsa-miR-490-3p 0 0 1
chr1:23787448|23787606 hsa-miR-525-5p 0 0 1
chr1:23787448|23787606 hsa-miR-520a-5p 0 0 1
chr1:23787448|23787606 hsa-miR-1255b 0 0 1
chr1:23787448|23787606 hsa-miR-9 0 0 1
chr1:23787448|23787606 hsa-miR-3909 1 0 0
chr1:23787448|23787606 hsa-miR-3935 1 0 0
chr1:23787448|23787606 hsa-miR-3689c 1 0 0
chr1:23787448|23787606 hsa-miR-6765-5p 1 0 0
chr1:23787448|23787606 hsa-miR-7106-5p 1 0 0
chr1:23787448|23787606 hsa-miR-6894-5p 1 0 0
chr1:23787448|23787606 hsa-miR-766-3p 1 0 0
chr1:23787448|23787606 hsa-miR-6799-5p 1 0 0
chr1:23787448|23787606 hsa-miR-6728-5p 1 0 0
chr1:23787448|23787606 hsa-miR-3192-5p 1 0 0
chr1:23787448|23787606 hsa-miR-593-5p 1 0 0
chr1:23787448|23787606 hsa-miR-6741-5p 1 0 0
chr1:23787448|23787606 hsa-miR-2467-5p 1 0 0
chr1:23787448|23787606 hsa-miR-6771-5p 1 0 0
chr1:23787448|23787606 hsa-miR-149-3p 1 0 0
chr1:23787448|23787606 hsa-miR-6824-5p 1 0 0
chr1:23787448|23787606 hsa-miR-1304-5p 1 0 0
chr1:23787448|23787606 hsa-miR-3675-5p 1 0 0
chr1:23787448|23787606 hsa-miR-1233-5p 1 0 0
chr1:23787448|23787606 hsa-miR-3689b-3p 1 0 0
chr1:23787448|23787606 hsa-miR-4763-3p 1 0 0
chr1:23787448|23787606 hsa-miR-6752-5p 1 0 0
chr1:23787448|23787606 hsa-miR-6803-5p 1 0 0
chr1:23787448|23787606 hsa-miR-328-5p 1 0 0
chr1:23787448|23787606 hsa-miR-3689a-3p 1 0 0
chr1:23787448|23787606 hsa-miR-6883-5p 1 0 0
chr1:23787448|23787606 hsa-miR-4758-5p 1 0 0
chr1:23787448|23787606 hsa-miR-6855-5p 1 0 0
chr1:23787448|23787606 hsa-miR-6877-3p 1 0 0
chr1:23787448|23787606 hsa-miR-3679-5p 1 0 0
chr1:23787448|23787606 hsa-miR-330-5p 1 0 0
chr1:23787448|23787606 hsa-miR-3059-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:23787448|23787606
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MVPWHLHNPPSGVVSSVGQVSAASPKDKAWQRLWQPTLSGASS
Nucleotide Sequence ATGGTCCCCTGGCACCTACACAACCCTCCCAGTGGTGTCGTATCTTCCGTAGGCCAGGTTTCTGCAGCAAGCCCCAAAGACAAAGCTTGGCAGAGGCTGTGGCAGCCAACTCTCTCTGGAGCCTCATCC
CircID chr1:23787448|23787606
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MAPTQPSQWCRIFRRPGFCSKPQRQSLAEAVAANSLWSLI
Nucleotide Sequence CTGGCACCTACACAACCCTCCCAGTGGTGTCGTATCTTCCGTAGGCCAGGTTTCTGCAGCAAGCCCCAAAGACAAAGCTTGGCAGAGGCTGTGGCAGCCAACTCTCTCTGGAGCCTCATC
CircID chr1:23787448|23787606
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MPQPLPSFVFGACCRNLAYGRYDTTGRVV
Nucleotide Sequence CTGCCACAGCCTCTGCCAAGCTTTGTCTTTGGGGCTTGCTGCAGAAACCTGGCCTACGGAAGATACGACACCACTGGGAGGGTTGTGTAG
CircID chr1:23787448|23787606
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MSLGLAAETWPTEDTTPLGGLCRCQGTIVVL
Nucleotide Sequence TTGTCTTTGGGGCTTGCTGCAGAAACCTGGCCTACGGAAGATACGACACCACTGGGAGGGTTGTGTAGGTGCCAGGGGACCATCGTGGTTCTCTAG
CircID chr1:23787448|23787606
ORF Type ORF5
Protein Length 52
Nucleotide Length 156
Protein Sequence MRLQRELAATASAKLCLWGLLQKPGLRKIRHHWEGCVGARGPSWFSRALWKL
Nucleotide Sequence ATGAGGCTCCAGAGAGAGTTGGCTGCCACAGCCTCTGCCAAGCTTTGTCTTTGGGGCTTGCTGCAGAAACCTGGCCTACGGAAGATACGACACCACTGGGAGGGTTGTGTAGGTGCCAGGGGACCATCGTGGTTCTCTAGGGCGCTGTGGAAATTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab