CircRNA Information

General Information
circRNA Basic Information
CircID chr1:23787569|23787670
Strand +
CircType exon
Host Gene ENSG00000057757.8;
Algorism CIRI2;
Sequence ATGGCCACATTAACTGGAAAAGCAAGTGTTACCCATGACTGCCAGATGCCACCCAGCCCAAGACCCAATTTCCACAGCGCCCTAGAGAACCACGATGGTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:23787569|23787670 hsa-miR-34a-5p 0 0 1
chr1:23787569|23787670 hsa-miR-34a-3p 0 0 1
chr1:23787569|23787670 hsa-miR-141-5p 0 0 1
chr1:23787569|23787670 hsa-miR-141-3p 0 0 1
chr1:23787569|23787670 hsa-miR-200a-5p 0 0 1
chr1:23787569|23787670 hsa-miR-200a-3p 0 0 1
chr1:23787569|23787670 hsa-miR-449a 0 0 1
chr1:23787569|23787670 hsa-miR-555 0 0 1
chr1:23787569|23787670 hsa-miR-569 0 0 1
chr1:23787569|23787670 hsa-miR-635 0 0 1
chr1:23787569|23787670 hsa-miR-449b-5p 0 0 1
chr1:23787569|23787670 hsa-miR-449b-3p 0 0 1
chr1:23787569|23787670 hsa-miR-663b 0 0 1
chr1:23787569|23787670 hsa-miR-1293 1 0 1
chr1:23787569|23787670 hsa-miR-1251-5p 0 0 1
chr1:23787569|23787670 hsa-miR-1251-3p 0 0 1
chr1:23787569|23787670 hsa-miR-145-5p 0 0 1
chr1:23787569|23787670 hsa-miR-193a-5p 1 1 1
chr1:23787569|23787670 hsa-miR-34c-5p 0 0 1
chr1:23787569|23787670 hsa-miR-1308 0 0 1
chr1:23787569|23787670 hsa-miR-762 1 0 0
chr1:23787569|23787670 hsa-miR-920 1 0 0
chr1:23787569|23787670 hsa-miR-1182 1 1 0
chr1:23787569|23787670 hsa-miR-1295a 1 0 0
chr1:23787569|23787670 hsa-miR-1268a 1 0 0
chr1:23787569|23787670 hsa-miR-3141 1 0 0
chr1:23787569|23787670 hsa-miR-3178 1 0 0
chr1:23787569|23787670 hsa-miR-4322 1 0 0
chr1:23787569|23787670 hsa-miR-4259 1 1 0
chr1:23787569|23787670 hsa-miR-3909 1 0 0
chr1:23787569|23787670 hsa-miR-1268b 1 0 0
chr1:23787569|23787670 hsa-miR-4440 1 0 0
chr1:23787569|23787670 hsa-miR-4492 1 0 0
chr1:23787569|23787670 hsa-miR-4498 1 0 0
chr1:23787569|23787670 hsa-miR-4507 1 0 0
chr1:23787569|23787670 hsa-miR-1587 1 1 0
chr1:23787569|23787670 hsa-miR-4651 1 0 0
chr1:23787569|23787670 hsa-miR-4656 1 0 0
chr1:23787569|23787670 hsa-miR-4657 1 1 0
chr1:23787569|23787670 hsa-miR-4674 1 0 0
chr1:23787569|23787670 hsa-miR-4689 1 0 0
chr1:23787569|23787670 hsa-miR-4692 1 0 0
chr1:23787569|23787670 hsa-miR-4741 1 0 0
chr1:23787569|23787670 hsa-miR-4752 1 0 0
chr1:23787569|23787670 hsa-miR-5093 1 0 0
chr1:23787569|23787670 hsa-miR-5787 1 0 0
chr1:23787569|23787670 hsa-miR-8073 1 0 0
chr1:23787569|23787670 hsa-miR-6833-5p 1 1 0
chr1:23787569|23787670 hsa-miR-7114-5p 1 1 0
chr1:23787569|23787670 hsa-miR-3192-5p 1 0 0
chr1:23787569|23787670 hsa-miR-3064-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6741-5p 1 0 0
chr1:23787569|23787670 hsa-miR-5589-5p 1 1 0
chr1:23787569|23787670 hsa-miR-6776-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6716-5p 1 0 0
chr1:23787569|23787670 hsa-miR-185-3p 1 0 0
chr1:23787569|23787670 hsa-miR-3150b-3p 1 0 0
chr1:23787569|23787670 hsa-miR-3944-3p 1 0 0
chr1:23787569|23787670 hsa-miR-1229-5p 1 0 0
chr1:23787569|23787670 hsa-miR-193b-5p 1 0 0
chr1:23787569|23787670 hsa-miR-1228-5p 1 0 0
chr1:23787569|23787670 hsa-miR-296-3p 1 0 0
chr1:23787569|23787670 hsa-miR-3677-3p 1 0 0
chr1:23787569|23787670 hsa-miR-4446-3p 1 0 0
chr1:23787569|23787670 hsa-miR-6717-5p 1 0 0
chr1:23787569|23787670 hsa-miR-7160-3p 1 0 0
chr1:23787569|23787670 hsa-miR-1250-5p 1 0 0
chr1:23787569|23787670 hsa-miR-3619-3p 1 1 0
chr1:23787569|23787670 hsa-miR-597-3p 1 1 0
chr1:23787569|23787670 hsa-miR-3126-3p 0 1 0
chr1:23787569|23787670 hsa-miR-329-5p 1 0 0
chr1:23787569|23787670 hsa-miR-5001-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6726-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6737-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6756-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6819-5p 1 0 0
chr1:23787569|23787670 hsa-miR-10401-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6774-5p 1 1 0
chr1:23787569|23787670 hsa-miR-3620-5p 1 1 0
chr1:23787569|23787670 hsa-miR-328-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6846-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6848-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6885-5p 1 0 0
chr1:23787569|23787670 hsa-miR-939-5p 1 0 0
chr1:23787569|23787670 hsa-miR-10394-3p 1 0 0
chr1:23787569|23787670 hsa-miR-3940-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6736-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6855-5p 1 0 0
chr1:23787569|23787670 hsa-miR-4667-5p 1 0 0
chr1:23787569|23787670 hsa-miR-6791-5p 1 0 0
chr1:23787569|23787670 hsa-miR-9851-5p 1 1 0
chr1:23787569|23787670 hsa-miR-10400-3p 1 0 0
chr1:23787569|23787670 hsa-miR-330-5p 1 0 0
chr1:23787569|23787670 hsa-miR-3059-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:23787569|23787670
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MATLTGKASVTHDCQMPPSPRPNFHSALENHDGP
Nucleotide Sequence ATGGCCACATTAACTGGAAAAGCAAGTGTTACCCATGACTGCCAGATGCCACCCAGCCCAAGACCCAATTTCCACAGCGCCCTAGAGAACCACGATGGTCCC
CircID chr1:23787569|23787670
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MWKLGLGLGGIWQSWVTLAFPVNVA
Nucleotide Sequence CTGTGGAAATTGGGTCTTGGGCTGGGTGGCATCTGGCAGTCATGGGTAACACTTGCTTTTCCAGTTAATGTGGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab