CircRNA Information

General Information
circRNA Basic Information
CircID chr1:23794940|23795220
Strand +
CircType exon
Host Gene ENSG00000011009.9;
Algorism CIRI2;
Sequence AGCAGCAAGGGGACCCCGGGGCCATGGCCACATTCATGACTGAGAAGCAGCTGAGTGGAGGCAGGAGACACGATTATCTGGGCAGAATCAGTTGGGGCAGGGGCCTGGGGGGGCCCCATGGGCCAAACCCTGAGGTCACAGGAGGGGGCCCAAAGCGGGGCTAGTGAGTGAGGTCCTGAGTGAGTGGGTCAGCGGCTGGGCCCCTTTCTCCAGCTGCCTGTAGCCCCTCCAATACTGCTGCCAGGGGGGCCCGCCTCCAGGGAAATGGATAAGAAAGCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:23794940|23795220 hsa-miR-187-5p 0 0 1
chr1:23794940|23795220 hsa-miR-187-3p 0 0 1
chr1:23794940|23795220 hsa-miR-328-5p 0 0 1
chr1:23794940|23795220 hsa-miR-328-3p 0 0 1
chr1:23794940|23795220 hsa-miR-510-5p 0 0 1
chr1:23794940|23795220 hsa-miR-510-3p 0 0 1
chr1:23794940|23795220 hsa-miR-650 0 0 1
chr1:23794940|23795220 hsa-miR-663b 0 0 1
chr1:23794940|23795220 hsa-miR-1266-5p 0 0 1
chr1:23794940|23795220 hsa-miR-1266-3p 0 0 1
chr1:23794940|23795220 hsa-miR-512-5p 0 0 1
chr1:23794940|23795220 hsa-miR-296-5p 1 1 1
chr1:23794940|23795220 hsa-miR-615-5p 0 1 1
chr1:23794940|23795220 hsa-miR-885-3p 0 0 1
chr1:23794940|23795220 hsa-miR-423-5p 0 1 1
chr1:23794940|23795220 hsa-miR-361-3p 1 0 1
chr1:23794940|23795220 hsa-miR-1207-3p 0 0 1
chr1:23794940|23795220 hsa-miR-331-3p 0 0 1
chr1:23794940|23795220 hsa-miR-324-3p 1 0 1
chr1:23794940|23795220 hsa-miR-1274a 0 0 1
chr1:23794940|23795220 hsa-miR-768-5p 0 0 1
chr1:23794940|23795220 hsa-miR-346 1 0 0
chr1:23794940|23795220 hsa-miR-572 1 0 0
chr1:23794940|23795220 hsa-miR-1470 1 0 0
chr1:23794940|23795220 hsa-miR-1538 1 0 0
chr1:23794940|23795220 hsa-miR-1913 1 1 0
chr1:23794940|23795220 hsa-miR-1976 1 1 0
chr1:23794940|23795220 hsa-miR-4313 0 1 0
chr1:23794940|23795220 hsa-miR-4264 0 1 0
chr1:23794940|23795220 hsa-miR-4281 1 0 0
chr1:23794940|23795220 hsa-miR-3621 1 0 0
chr1:23794940|23795220 hsa-miR-3937 0 1 0
chr1:23794940|23795220 hsa-miR-4449 1 0 0
chr1:23794940|23795220 hsa-miR-3135b 0 1 0
chr1:23794940|23795220 hsa-miR-4488 1 1 0
chr1:23794940|23795220 hsa-miR-4489 0 1 0
chr1:23794940|23795220 hsa-miR-4512 1 1 0
chr1:23794940|23795220 hsa-miR-4692 0 1 0
chr1:23794940|23795220 hsa-miR-4767 1 1 0
chr1:23794940|23795220 hsa-miR-6085 0 1 0
chr1:23794940|23795220 hsa-miR-8073 0 1 0
chr1:23794940|23795220 hsa-miR-8089 0 1 0
chr1:23794940|23795220 hsa-miR-18a-3p 1 1 0
chr1:23794940|23795220 hsa-miR-6747-3p 0 1 0
chr1:23794940|23795220 hsa-miR-4665-3p 1 0 0
chr1:23794940|23795220 hsa-miR-4726-3p 1 0 0
chr1:23794940|23795220 hsa-miR-6765-5p 1 0 0
chr1:23794940|23795220 hsa-miR-6836-3p 1 1 0
chr1:23794940|23795220 hsa-miR-766-3p 1 0 0
chr1:23794940|23795220 hsa-miR-210-5p 0 1 0
chr1:23794940|23795220 hsa-miR-486-5p 1 0 0
chr1:23794940|23795220 hsa-miR-6089 1 0 0
chr1:23794940|23795220 hsa-miR-6840-5p 1 0 0
chr1:23794940|23795220 hsa-miR-6762-3p 1 0 0
chr1:23794940|23795220 hsa-miR-3187-3p 0 1 0
chr1:23794940|23795220 hsa-miR-3189-5p 1 0 0
chr1:23794940|23795220 hsa-miR-6787-3p 1 1 0
chr1:23794940|23795220 hsa-miR-1915-5p 1 0 0
chr1:23794940|23795220 hsa-miR-7108-5p 0 1 0
chr1:23794940|23795220 hsa-miR-6882-3p 1 0 0
chr1:23794940|23795220 hsa-miR-4763-5p 1 0 0
chr1:23794940|23795220 hsa-miR-6763-3p 1 0 0
chr1:23794940|23795220 hsa-miR-6823-5p 1 0 0
chr1:23794940|23795220 hsa-miR-488-5p 0 1 0
chr1:23794940|23795220 hsa-miR-6749-5p 1 0 0
chr1:23794940|23795220 hsa-miR-6818-3p 0 1 0
chr1:23794940|23795220 hsa-miR-3648 1 0 0
chr1:23794940|23795220 hsa-miR-4667-3p 0 1 0
chr1:23794940|23795220 hsa-miR-7154-5p 0 1 0
chr1:23794940|23795220 hsa-miR-6825-3p 1 1 0
chr1:23794940|23795220 hsa-miR-4695-3p 1 1 0
chr1:23794940|23795220 hsa-miR-660-3p 0 1 0
chr1:23794940|23795220 hsa-miR-4758-3p 1 0 0
chr1:23794940|23795220 hsa-miR-6887-3p 0 1 0
chr1:23794940|23795220 hsa-miR-6793-3p 1 0 0
chr1:23794940|23795220 hsa-miR-1180-5p 0 1 0
chr1:23794940|23795220 hsa-miR-6752-3p 1 1 0
chr1:23794940|23795220 hsa-miR-3940-3p 1 0 0
chr1:23794940|23795220 hsa-miR-214-3p 1 0 0
chr1:23794940|23795220 hsa-miR-3160-5p 0 1 0
chr1:23794940|23795220 hsa-miR-6738-3p 0 1 0
chr1:23794940|23795220 hsa-miR-4749-3p 1 0 0
chr1:23794940|23795220 hsa-miR-6777-3p 1 0 0
chr1:23794940|23795220 hsa-miR-6748-3p 1 0 0
chr1:23794940|23795220 hsa-miR-4433a-5p 1 0 0
chr1:23794940|23795220 hsa-miR-4750-3p 0 1 0
chr1:23794940|23795220 hsa-miR-4433b-5p 1 0 0
chr1:23794940|23795220 hsa-miR-3675-5p 0 1 0
chr1:23794940|23795220 hsa-miR-4727-5p 1 0 0
chr1:23794940|23795220 hsa-miR-18b-3p 1 0 0
chr1:23794940|23795220 hsa-miR-3680-5p 0 1 0
chr1:23794940|23795220 hsa-miR-628-5p 0 1 0
chr1:23794940|23795220 hsa-miR-4763-3p 1 0 0
chr1:23794940|23795220 hsa-miR-6813-5p 0 1 0
chr1:23794940|23795220 hsa-miR-6722-3p 1 0 0
chr1:23794940|23795220 hsa-miR-6779-5p 1 0 0
chr1:23794940|23795220 hsa-miR-6780a-5p 1 0 0
chr1:23794940|23795220 hsa-miR-4728-5p 1 0 0
chr1:23794940|23795220 hsa-miR-10396a-3p 1 1 0
chr1:23794940|23795220 hsa-miR-10396b-3p 1 1 0
chr1:23794940|23795220 hsa-miR-6799-3p 0 1 0
chr1:23794940|23795220 hsa-miR-6877-3p 1 0 0
chr1:23794940|23795220 hsa-miR-3184-5p 0 1 0
chr1:23794940|23795220 hsa-miR-6790-5p 0 1 0
chr1:23794940|23795220 hsa-miR-6724-5p 1 0 0
chr1:23794940|23795220 hsa-miR-6791-5p 1 0 0
chr1:23794940|23795220 hsa-miR-6792-3p 0 1 0
chr1:23794940|23795220 hsa-miR-6862-3p 1 0 0
chr1:23794940|23795220 hsa-miR-6801-3p 0 1 0
chr1:23794940|23795220 hsa-miR-6810-3p 1 1 0
chr1:23794940|23795220 hsa-miR-6829-3p 1 1 0
chr1:23794940|23795220 hsa-miR-6775-3p 1 0 0
chr1:23794940|23795220 hsa-miR-10392-3p 1 0 0
chr1:23794940|23795220 hsa-miR-7114-3p 0 1 0
chr1:23794940|23795220 hsa-miR-3619-5p 1 0 0
chr1:23794940|23795220 hsa-miR-4690-3p 1 0 0
chr1:23794940|23795220 hsa-miR-5195-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:23794940|23795220
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MGPFLQLPVAPPILLPGGPASREMDKKA
Nucleotide Sequence CTGGGCCCCTTTCTCCAGCTGCCTGTAGCCCCTCCAATACTGCTGCCAGGGGGGCCCGCCTCCAGGGAAATGGATAAGAAAGCA
CircID chr1:23794940|23795220
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MATFMTEKQLSGGRRHDYLGRISWGRGLGGPHGPNPEVTGGGPKRG
Nucleotide Sequence ATGGCCACATTCATGACTGAGAAGCAGCTGAGTGGAGGCAGGAGACACGATTATCTGGGCAGAATCAGTTGGGGCAGGGGCCTGGGGGGGCCCCATGGGCCAAACCCTGAGGTCACAGGAGGGGGCCCAAAGCGGGGCTAG
CircID chr1:23794940|23795220
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MGPPQAPAPTDSAQIIVSPASTQLLLSHECGHGPGVPLL
Nucleotide Sequence ATGGGGCCCCCCCAGGCCCCTGCCCCAACTGATTCTGCCCAGATAATCGTGTCTCCTGCCTCCACTCAGCTGCTTCTCAGTCATGAATGTGGCCATGGCCCCGGGGTCCCCTTGCTG
CircID chr1:23794940|23795220
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence LLSYPFPWRRAPLAAVLEGLQAAGERGPAADPLTQDLTH
Nucleotide Sequence CTGCTTTCTTATCCATTTCCCTGGAGGCGGGCCCCCCTGGCAGCAGTATTGGAGGGGCTACAGGCAGCTGGAGAAAGGGGCCCAGCCGCTGACCCACTCACTCAGGACCTCACTCACTAG
CircID chr1:23794940|23795220
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MEKGAQPLTHSLRTSLTSPALGPLL
Nucleotide Sequence CTGGAGAAAGGGGCCCAGCCGCTGACCCACTCACTCAGGACCTCACTCACTAGCCCCGCTTTGGGCCCCCTCCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab