CircRNA Information

General Information
circRNA Basic Information
CircID chr1:2395197|2395411
Strand +
CircType exon
Host Gene ENSG00000157916.17;
Algorism CIRI2;
Sequence CCTCTGTGGATCCCTCAGGGTTCCCCCGCCCAGGCACCTTGTCTGCTCCACGCCCTGTCCTGGGTCTCTGGTCTGGCAGGAGCAGGAGGGATCCTGTCCTCTCAGGGCCAGGTCCTCCACCCCATGAACAGGAAAATGTTATCTACAACTCTCAGGTAGTCCATCCATCTGCGTCCCAGTTTCTTATCTGGCAAGCGGAGGTAACGTATCTGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:2395197|2395411 hsa-miR-18a-5p 0 0 1
chr1:2395197|2395411 hsa-miR-18a-3p 0 0 1
chr1:2395197|2395411 hsa-miR-370-5p 0 0 1
chr1:2395197|2395411 hsa-miR-370-3p 0 0 1
chr1:2395197|2395411 hsa-miR-328-5p 0 0 1
chr1:2395197|2395411 hsa-miR-328-3p 0 0 1
chr1:2395197|2395411 hsa-miR-18b-5p 0 0 1
chr1:2395197|2395411 hsa-miR-18b-3p 0 0 1
chr1:2395197|2395411 hsa-miR-492 0 1 1
chr1:2395197|2395411 hsa-miR-577 0 0 1
chr1:2395197|2395411 hsa-miR-608 1 0 1
chr1:2395197|2395411 hsa-miR-624-5p 0 0 1
chr1:2395197|2395411 hsa-miR-624-3p 0 0 1
chr1:2395197|2395411 hsa-miR-625-5p 0 0 1
chr1:2395197|2395411 hsa-miR-625-3p 0 0 1
chr1:2395197|2395411 hsa-miR-631 0 1 1
chr1:2395197|2395411 hsa-miR-661 0 0 1
chr1:2395197|2395411 hsa-miR-765 0 0 1
chr1:2395197|2395411 hsa-miR-543 0 0 1
chr1:2395197|2395411 hsa-miR-1202 0 0 1
chr1:2395197|2395411 hsa-miR-1206 0 0 1
chr1:2395197|2395411 hsa-miR-1291 0 1 1
chr1:2395197|2395411 hsa-miR-342-5p 0 0 1
chr1:2395197|2395411 hsa-miR-125a-5p 0 0 1
chr1:2395197|2395411 hsa-miR-125b 0 0 1
chr1:2395197|2395411 hsa-miR-550 0 0 1
chr1:2395197|2395411 hsa-miR-1308 0 0 1
chr1:2395197|2395411 hsa-miR-1268 0 0 1
chr1:2395197|2395411 hsa-miR-1254 0 0 1
chr1:2395197|2395411 hsa-miR-663 0 0 1
chr1:2395197|2395411 hsa-miR-663a 0 1 0
chr1:2395197|2395411 hsa-miR-1293 1 0 0
chr1:2395197|2395411 hsa-miR-1268a 1 1 0
chr1:2395197|2395411 hsa-miR-1976 0 1 0
chr1:2395197|2395411 hsa-miR-2278 0 1 0
chr1:2395197|2395411 hsa-miR-3134 0 1 0
chr1:2395197|2395411 hsa-miR-3166 0 1 0
chr1:2395197|2395411 hsa-miR-1193 1 0 0
chr1:2395197|2395411 hsa-miR-3661 1 1 0
chr1:2395197|2395411 hsa-miR-1268b 1 1 0
chr1:2395197|2395411 hsa-miR-4436a 0 1 0
chr1:2395197|2395411 hsa-miR-3972 1 0 0
chr1:2395197|2395411 hsa-miR-4651 1 0 0
chr1:2395197|2395411 hsa-miR-4688 1 0 0
chr1:2395197|2395411 hsa-miR-4751 0 1 0
chr1:2395197|2395411 hsa-miR-5090 1 0 0
chr1:2395197|2395411 hsa-miR-6081 1 1 0
chr1:2395197|2395411 hsa-miR-6745 0 1 0
chr1:2395197|2395411 hsa-miR-6860 1 0 0
chr1:2395197|2395411 hsa-miR-6840-3p 1 1 0
chr1:2395197|2395411 hsa-miR-6728-5p 1 0 0
chr1:2395197|2395411 hsa-miR-8071 1 0 0
chr1:2395197|2395411 hsa-miR-7114-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6880-5p 1 1 0
chr1:2395197|2395411 hsa-miR-7847-3p 0 1 0
chr1:2395197|2395411 hsa-miR-6890-5p 0 1 0
chr1:2395197|2395411 hsa-miR-197-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6742-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6772-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6732-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6827-5p 0 1 0
chr1:2395197|2395411 hsa-miR-6798-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6782-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6772-3p 0 1 0
chr1:2395197|2395411 hsa-miR-4738-3p 1 1 0
chr1:2395197|2395411 hsa-miR-4640-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6753-5p 1 1 0
chr1:2395197|2395411 hsa-miR-1228-5p 0 1 0
chr1:2395197|2395411 hsa-miR-4690-5p 1 1 0
chr1:2395197|2395411 hsa-miR-4713-3p 0 1 0
chr1:2395197|2395411 hsa-miR-1266-3p 1 1 0
chr1:2395197|2395411 hsa-miR-4667-3p 0 1 0
chr1:2395197|2395411 hsa-miR-3162-5p 1 0 0
chr1:2395197|2395411 hsa-miR-7112-5p 1 0 0
chr1:2395197|2395411 hsa-miR-3922-5p 1 0 0
chr1:2395197|2395411 hsa-miR-4661-3p 0 1 0
chr1:2395197|2395411 hsa-miR-5004-5p 0 1 0
chr1:2395197|2395411 hsa-miR-6761-5p 0 1 0
chr1:2395197|2395411 hsa-miR-1207-5p 1 0 0
chr1:2395197|2395411 hsa-miR-4763-3p 1 0 0
chr1:2395197|2395411 hsa-miR-6787-5p 0 1 0
chr1:2395197|2395411 hsa-miR-6812-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6775-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6737-5p 1 1 0
chr1:2395197|2395411 hsa-miR-6743-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6756-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6819-5p 1 1 0
chr1:2395197|2395411 hsa-miR-6774-5p 1 1 0
chr1:2395197|2395411 hsa-miR-6875-5p 1 1 0
chr1:2395197|2395411 hsa-miR-6879-5p 1 0 0
chr1:2395197|2395411 hsa-miR-7111-5p 1 0 0
chr1:2395197|2395411 hsa-miR-3620-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6836-5p 1 1 0
chr1:2395197|2395411 hsa-miR-4632-5p 1 0 0
chr1:2395197|2395411 hsa-miR-4685-5p 1 1 0
chr1:2395197|2395411 hsa-miR-4726-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6729-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6735-5p 1 0 0
chr1:2395197|2395411 hsa-miR-675-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6777-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6795-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6887-5p 1 0 0
chr1:2395197|2395411 hsa-miR-4723-5p 0 1 0
chr1:2395197|2395411 hsa-miR-4769-5p 1 0 0
chr1:2395197|2395411 hsa-miR-3085-5p 1 0 0
chr1:2395197|2395411 hsa-miR-6785-5p 1 0 0
chr1:2395197|2395411 hsa-miR-550a-3-5p 0 1 0
chr1:2395197|2395411 hsa-miR-550a-5p 0 1 0
chr1:2395197|2395411 hsa-miR-4722-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr1:2395197|2395411
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MWIPQGSPAQAPCLLHALSWVSGLAGAGGILSSQGQVLHPMNRKMLSTTLR
Nucleotide Sequence CTGTGGATCCCTCAGGGTTCCCCCGCCCAGGCACCTTGTCTGCTCCACGCCCTGTCCTGGGTCTCTGGTCTGGCAGGAGCAGGAGGGATCCTGTCCTCTCAGGGCCAGGTCCTCCACCCCATGAACAGGAAAATGTTATCTACAACTCTCAGGTAG
CircID chr1:2395197|2395411
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MSAPRPVLGLWSGRSRRDPVLSGPGPPPHEQENVIYNSQVVHPSASQFLIWQAEVTYLL
Nucleotide Sequence TTGTCTGCTCCACGCCCTGTCCTGGGTCTCTGGTCTGGCAGGAGCAGGAGGGATCCTGTCCTCTCAGGGCCAGGTCCTCCACCCCATGAACAGGAAAATGTTATCTACAACTCTCAGGTAGTCCATCCATCTGCGTCCCAGTTTCTTATCTGGCAAGCGGAGGTAACGTATCTGCTC
CircID chr1:2395197|2395411
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MPDKKLGRRWMDYLRVVDNIFLFMGWRTWP
Nucleotide Sequence TTGCCAGATAAGAAACTGGGACGCAGATGGATGGACTACCTGAGAGTTGTAGATAACATTTTCCTGTTCATGGGGTGGAGGACCTGGCCCTGA
CircID chr1:2395197|2395411
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MLLPDQRPRTGRGADKVPGRGNPEGSTE
Nucleotide Sequence CTGCTCCTGCCAGACCAGAGACCCAGGACAGGGCGTGGAGCAGACAAGGTGCCTGGGCGGGGGAACCCTGAGGGATCCACAGAG
CircID chr1:2395197|2395411
ORF Type ORF5
Protein Length 37
Nucleotide Length 111
Protein Sequence MALRGQDPSCSCQTRDPGQGVEQTRCLGGGTLRDPQR
Nucleotide Sequence CTGGCCCTGAGAGGACAGGATCCCTCCTGCTCCTGCCAGACCAGAGACCCAGGACAGGGCGTGGAGCAGACAAGGTGCCTGGGCGGGGGAACCCTGAGGGATCCACAGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab