CircRNA Information

General Information
circRNA Basic Information
CircID chr1:244054458|244054776
Strand -
CircType exon
Host Gene ENSG00000179456.10;
Algorism CIRI2;
Sequence AGAGTCTTTGTCCCAGAGGTCTGTCACCTCCGTGAGGGATTCGGCAGATGTTGACTGTGTGCTGGACCTGTCTGTCAAGTCCAGCCTTTCAGGAGTTGAAAATCTGAACAGCTCTTATTTCTCTTCACAGGACGTGCTGAGAAGCAACCTGGTGCAGGTGAAGGTGGAGAAAGAGGCTTCCTGTGATGAGAGTGATGTTGGCACTAATGACTATGACATGGAACATAGCACTGTGAAAGAAAGTGTGAGCACTAATAACAGGGTACAGTATGAGCCGGCCCATCTGGCTCCCCTGAGGGAGGACTCGGTCTTGAGGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:244054458|244054776 hsa-miR-27a-5p 0 0 1
chr1:244054458|244054776 hsa-miR-27a-3p 0 0 1
chr1:244054458|244054776 hsa-miR-10a-5p 0 0 1
chr1:244054458|244054776 hsa-miR-10a-3p 0 0 1
chr1:244054458|244054776 hsa-miR-10b-5p 0 0 1
chr1:244054458|244054776 hsa-miR-10b-3p 0 0 1
chr1:244054458|244054776 hsa-miR-27b-5p 0 0 1
chr1:244054458|244054776 hsa-miR-27b-3p 0 0 1
chr1:244054458|244054776 hsa-miR-326 0 0 1
chr1:244054458|244054776 hsa-miR-422a 0 1 1
chr1:244054458|244054776 hsa-miR-412-5p 0 0 1
chr1:244054458|244054776 hsa-miR-412-3p 0 0 1
chr1:244054458|244054776 hsa-miR-488-5p 0 0 1
chr1:244054458|244054776 hsa-miR-488-3p 0 0 1
chr1:244054458|244054776 hsa-miR-519e-5p 0 0 1
chr1:244054458|244054776 hsa-miR-519e-3p 0 0 1
chr1:244054458|244054776 hsa-miR-520f-5p 0 0 1
chr1:244054458|244054776 hsa-miR-520f-3p 0 0 1
chr1:244054458|244054776 hsa-miR-505-5p 0 0 1
chr1:244054458|244054776 hsa-miR-505-3p 0 0 1
chr1:244054458|244054776 hsa-miR-539-5p 0 0 1
chr1:244054458|244054776 hsa-miR-539-3p 0 0 1
chr1:244054458|244054776 hsa-miR-939-5p 0 0 1
chr1:244054458|244054776 hsa-miR-939-3p 0 0 1
chr1:244054458|244054776 hsa-miR-1178-5p 0 0 1
chr1:244054458|244054776 hsa-miR-1178-3p 0 0 1
chr1:244054458|244054776 hsa-miR-1183 0 0 1
chr1:244054458|244054776 hsa-miR-1305 0 1 1
chr1:244054458|244054776 hsa-miR-1266-5p 0 0 1
chr1:244054458|244054776 hsa-miR-1266-3p 0 0 1
chr1:244054458|244054776 hsa-miR-1324 0 1 1
chr1:244054458|244054776 hsa-miR-671-5p 0 0 1
chr1:244054458|244054776 hsa-miR-512-3p 0 0 1
chr1:244054458|244054776 hsa-miR-767-5p 0 0 1
chr1:244054458|244054776 hsa-miR-513a-5p 0 1 1
chr1:244054458|244054776 hsa-miR-338-3p 0 0 1
chr1:244054458|244054776 hsa-miR-330-5p 0 1 1
chr1:244054458|244054776 hsa-miR-515-3p 0 0 1
chr1:244054458|244054776 hsa-miR-1302 0 0 1
chr1:244054458|244054776 hsa-miR-342-3p 0 0 1
chr1:244054458|244054776 hsa-miR-515-5p 0 0 1
chr1:244054458|244054776 hsa-miR-542-3p 0 0 1
chr1:244054458|244054776 hsa-miR-128 0 0 1
chr1:244054458|244054776 hsa-miR-1274b 0 0 1
chr1:244054458|244054776 hsa-miR-220c 0 0 1
chr1:244054458|244054776 hsa-miR-378 0 0 1
chr1:244054458|244054776 hsa-miR-371-3p 0 0 1
chr1:244054458|244054776 hsa-miR-499-3p 0 0 1
chr1:244054458|244054776 hsa-miR-2909 0 1 0
chr1:244054458|244054776 hsa-miR-378b 0 1 0
chr1:244054458|244054776 hsa-miR-378c 0 1 0
chr1:244054458|244054776 hsa-miR-4314 0 1 0
chr1:244054458|244054776 hsa-miR-378e 0 1 0
chr1:244054458|244054776 hsa-miR-378f 0 1 0
chr1:244054458|244054776 hsa-miR-378h 0 1 0
chr1:244054458|244054776 hsa-miR-4469 0 1 0
chr1:244054458|244054776 hsa-miR-4518 0 1 0
chr1:244054458|244054776 hsa-miR-378i 0 1 0
chr1:244054458|244054776 hsa-miR-4644 0 1 0
chr1:244054458|244054776 hsa-miR-197-3p 1 0 0
chr1:244054458|244054776 hsa-miR-4700-3p 0 1 0
chr1:244054458|244054776 hsa-miR-215-3p 0 1 0
chr1:244054458|244054776 hsa-miR-769-5p 1 0 0
chr1:244054458|244054776 hsa-miR-4709-3p 0 1 0
chr1:244054458|244054776 hsa-miR-7110-3p 1 0 0
chr1:244054458|244054776 hsa-miR-185-3p 1 0 0
chr1:244054458|244054776 hsa-miR-6827-5p 0 1 0
chr1:244054458|244054776 hsa-miR-4753-3p 0 1 0
chr1:244054458|244054776 hsa-miR-4436b-5p 1 1 0
chr1:244054458|244054776 hsa-miR-7109-3p 0 1 0
chr1:244054458|244054776 hsa-miR-4715-3p 1 0 0
chr1:244054458|244054776 hsa-miR-7854-3p 0 1 0
chr1:244054458|244054776 hsa-miR-7843-3p 1 1 0
chr1:244054458|244054776 hsa-miR-6867-3p 1 0 0
chr1:244054458|244054776 hsa-miR-7151-5p 1 0 0
chr1:244054458|244054776 hsa-miR-130b-5p 0 1 0
chr1:244054458|244054776 hsa-miR-3184-3p 0 1 0
chr1:244054458|244054776 hsa-miR-4524b-3p 0 1 0
chr1:244054458|244054776 hsa-miR-5001-5p 1 0 0
chr1:244054458|244054776 hsa-miR-6851-5p 0 1 0
chr1:244054458|244054776 hsa-miR-6722-3p 0 1 0
chr1:244054458|244054776 hsa-miR-6754-3p 0 1 0
chr1:244054458|244054776 hsa-miR-3620-5p 1 0 0
chr1:244054458|244054776 hsa-miR-328-5p 0 1 0
chr1:244054458|244054776 hsa-miR-378a-3p 0 1 0
chr1:244054458|244054776 hsa-miR-3689d 0 1 0
chr1:244054458|244054776 hsa-miR-6819-3p 1 1 0
chr1:244054458|244054776 hsa-miR-6823-3p 1 0 0
chr1:244054458|244054776 hsa-miR-6781-3p 1 1 0
chr1:244054458|244054776 hsa-miR-378d 0 1 0
chr1:244054458|244054776 hsa-miR-3681-3p 0 1 0
chr1:244054458|244054776 hsa-miR-302b-3p 0 1 0
chr1:244054458|244054776 hsa-miR-499a-3p 0 1 0
chr1:244054458|244054776 hsa-miR-4684-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr1:244054458|244054776
ORF Type ORF1
Protein Length 104
Nucleotide Length 312
Protein Sequence MSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEKEASCDESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDSVLRE
Nucleotide Sequence TTGTCCCAGAGGTCTGTCACCTCCGTGAGGGATTCGGCAGATGTTGACTGTGTGCTGGACCTGTCTGTCAAGTCCAGCCTTTCAGGAGTTGAAAATCTGAACAGCTCTTATTTCTCTTCACAGGACGTGCTGAGAAGCAACCTGGTGCAGGTGAAGGTGGAGAAAGAGGCTTCCTGTGATGAGAGTGATGTTGGCACTAATGACTATGACATGGAACATAGCACTGTGAAAGAAAGTGTGAGCACTAATAACAGGGTACAGTATGAGCCGGCCCATCTGGCTCCCCTGAGGGAGGACTCGGTCTTGAGGGAG

CircID chr1:244054458|244054776
ORF Type ORF2
Protein Length 52
Nucleotide Length 159
Protein Sequence MGRLILYPVISAHTFFHSAMFHVIVISANITLITGSLFLHLHLHQVASQHVL
Nucleotide Sequence ATGGGCCGGCTCATACTGTACCCTGTTATTAGTGCTCACACTTTCTTTCACAGTGCTATGTTCCATGTCATAGTCATTAGTGCCAACATCACTCTCATCACAGGAAGCCTCTTTCTCCACCTTCACCTGCACCAGGTTGCTTCTCAGCACGTCCTGTGA

CircID chr1:244054458|244054776
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MFRFSTPERLDLTDRSSTQSTSAESLTEVTDLWDKDS
Nucleotide Sequence CTGTTCAGATTTTCAACTCCTGAAAGGCTGGACTTGACAGACAGGTCCAGCACACAGTCAACATCTGCCGAATCCCTCACGGAGGTGACAGACCTCTGGGACAAAGACTCT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites