CircRNA Information

General Information
circRNA Basic Information
CircID chr1:244396868|244397118
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTCCAGCCCTAGGTCATAATTTAGTTCATGGGGATCTTGATCACCCTTTCCTTCCACAAGATACCACGTTGGTCCGTTACTTTGATGACATTTTGCTGATTGGACATAGTGAGCAAGAAGTAGCCATAACTGTAGACATATGGTAAGACATTACCATGTCAAAGAGTGGGTAATAAATCCAACTGAAATTCAGGGGTCTTTACCTCAGTGAAATTTCTAGGGGTCCAGTGGTGTGTGGTGTCGAGATAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:244396868|244397118 hsa-let-7b-5p 0 0 1
chr1:244396868|244397118 hsa-let-7b-3p 0 0 1
chr1:244396868|244397118 hsa-let-7c-5p 0 0 1
chr1:244396868|244397118 hsa-let-7c-3p 0 0 1
chr1:244396868|244397118 hsa-let-7d-5p 0 0 1
chr1:244396868|244397118 hsa-let-7d-3p 0 0 1
chr1:244396868|244397118 hsa-let-7e-5p 0 0 1
chr1:244396868|244397118 hsa-let-7e-3p 0 0 1
chr1:244396868|244397118 hsa-miR-98-5p 0 0 1
chr1:244396868|244397118 hsa-miR-98-3p 0 0 1
chr1:244396868|244397118 hsa-miR-192-5p 0 0 1
chr1:244396868|244397118 hsa-miR-192-3p 0 0 1
chr1:244396868|244397118 hsa-miR-215-5p 0 0 1
chr1:244396868|244397118 hsa-miR-215-3p 0 0 1
chr1:244396868|244397118 hsa-let-7g-5p 0 0 1
chr1:244396868|244397118 hsa-let-7g-3p 0 0 1
chr1:244396868|244397118 hsa-let-7i-5p 0 0 1
chr1:244396868|244397118 hsa-let-7i-3p 0 0 1
chr1:244396868|244397118 hsa-miR-191-5p 0 0 1
chr1:244396868|244397118 hsa-miR-191-3p 0 0 1
chr1:244396868|244397118 hsa-miR-185-5p 0 0 1
chr1:244396868|244397118 hsa-miR-185-3p 0 0 1
chr1:244396868|244397118 hsa-miR-135b-5p 0 0 1
chr1:244396868|244397118 hsa-miR-135b-3p 0 0 1
chr1:244396868|244397118 hsa-miR-489-5p 0 0 1
chr1:244396868|244397118 hsa-miR-489-3p 0 0 1
chr1:244396868|244397118 hsa-miR-202-5p 0 0 1
chr1:244396868|244397118 hsa-miR-202-3p 0 0 1
chr1:244396868|244397118 hsa-miR-520g-5p 0 0 1
chr1:244396868|244397118 hsa-miR-520g-3p 0 0 1
chr1:244396868|244397118 hsa-miR-520h 0 0 1
chr1:244396868|244397118 hsa-miR-545-5p 0 0 1
chr1:244396868|244397118 hsa-miR-545-3p 0 0 1
chr1:244396868|244397118 hsa-miR-559 0 0 1
chr1:244396868|244397118 hsa-miR-581 0 0 1
chr1:244396868|244397118 hsa-miR-934 0 0 1
chr1:244396868|244397118 hsa-miR-1178-5p 0 0 1
chr1:244396868|244397118 hsa-miR-1178-3p 0 0 1
chr1:244396868|244397118 hsa-miR-548j-5p 0 0 1
chr1:244396868|244397118 hsa-miR-548j-3p 0 0 1
chr1:244396868|244397118 hsa-miR-1290 0 0 1
chr1:244396868|244397118 hsa-miR-548p 0 0 1
chr1:244396868|244397118 hsa-miR-1252-5p 0 0 1
chr1:244396868|244397118 hsa-miR-1252-3p 0 0 1
chr1:244396868|244397118 hsa-miR-139-5p 0 0 1
chr1:244396868|244397118 hsa-miR-654-3p 0 0 1
chr1:244396868|244397118 hsa-miR-582-5p 0 0 1
chr1:244396868|244397118 hsa-miR-513a-3p 0 0 1
chr1:244396868|244397118 hsa-miR-548b-5p 0 0 1
chr1:244396868|244397118 hsa-miR-548d-5p 0 0 1
chr1:244396868|244397118 hsa-miR-876-5p 0 0 1
chr1:244396868|244397118 hsa-miR-362-3p 0 0 1
chr1:244396868|244397118 hsa-miR-556-3p 0 0 1
chr1:244396868|244397118 hsa-miR-548c-5p 0 0 1
chr1:244396868|244397118 hsa-miR-548a-5p 0 0 1
chr1:244396868|244397118 hsa-miR-548i 0 0 1
chr1:244396868|244397118 hsa-let-7a 0 0 1
chr1:244396868|244397118 hsa-let-7f 0 0 1
chr1:244396868|244397118 hsa-miR-135a 0 0 1
chr1:244396868|244397118 hsa-miR-514 0 0 1
chr1:244396868|244397118 hsa-miR-329 0 0 1
chr1:244396868|244397118 hsa-miR-548h 0 0 1
chr1:244396868|244397118 hsa-miR-3615 1 0 0
chr1:244396868|244397118 hsa-miR-5681a 0 1 0
chr1:244396868|244397118 hsa-miR-6863 1 0 0
chr1:244396868|244397118 hsa-miR-146a-3p 0 1 0
chr1:244396868|244397118 hsa-miR-17-3p 0 1 0
chr1:244396868|244397118 hsa-miR-6833-5p 0 1 0
chr1:244396868|244397118 hsa-miR-6880-5p 1 0 0
chr1:244396868|244397118 hsa-miR-874-5p 1 0 0
chr1:244396868|244397118 hsa-miR-28-3p 0 1 0
chr1:244396868|244397118 hsa-miR-3190-3p 0 1 0
chr1:244396868|244397118 hsa-miR-939-3p 1 0 0
chr1:244396868|244397118 hsa-miR-4638-3p 1 0 0
chr1:244396868|244397118 hsa-miR-875-3p 0 1 0
chr1:244396868|244397118 hsa-miR-196b-3p 1 0 0
chr1:244396868|244397118 hsa-miR-3682-5p 0 1 0
chr1:244396868|244397118 hsa-miR-6778-5p 1 0 0
chr1:244396868|244397118 hsa-miR-6797-5p 1 1 0
chr1:244396868|244397118 hsa-miR-324-3p 1 0 0
chr1:244396868|244397118 hsa-miR-329-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:244396868|244397118
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MVRYFDDILLIGHSEQEVAITVDIW
Nucleotide Sequence TTGGTCCGTTACTTTGATGACATTTTGCTGATTGGACATAGTGAGCAAGAAGTAGCCATAACTGTAGACATATGGTAA
CircID chr1:244396868|244397118
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MLTMSNQQNVIKVTDQRGILWKERVIKIPMN
Nucleotide Sequence TTGCTCACTATGTCCAATCAGCAAAATGTCATCAAAGTAACGGACCAACGTGGTATCTTGTGGAAGGAAAGGGTGATCAAGATCCCCATGAACTAA
CircID chr1:244396868|244397118
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MNFSWIYYPLFDMVMSYHMSTVMATSCSLCPISKMSSK
Nucleotide Sequence CTGAATTTCAGTTGGATTTATTACCCACTCTTTGACATGGTAATGTCTTACCATATGTCTACAGTTATGGCTACTTCTTGCTCACTATGTCCAATCAGCAAAATGTCATCAAAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab