CircRNA Information

General Information
circRNA Basic Information
CircID chr1:244855925|244856093
Strand -
CircType exon
Host Gene ENSG00000153187.15;
Algorism CIRI2;
Sequence CACGCATATTGAATCCTCCACGTCCTCTATGGCCACCACCTCTGTTAAACTGGTTCTTGCCACTCTTATTTTTATTGCTTTTCTTTGAGCCAGTGTTCTGTTTCTTTTCTGGTGGAAGAGCCTTTTTGCTTTCTTCCTTATATTGCTCCAAGAGTTTTTGGGCTTCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:244855925|244856093 hsa-miR-31-5p 0 0 1
chr1:244855925|244856093 hsa-miR-31-3p 0 0 1
chr1:244855925|244856093 hsa-miR-141-5p 0 0 1
chr1:244855925|244856093 hsa-miR-141-3p 0 0 1
chr1:244855925|244856093 hsa-miR-149-5p 0 0 1
chr1:244855925|244856093 hsa-miR-149-3p 0 0 1
chr1:244855925|244856093 hsa-miR-200a-5p 0 0 1
chr1:244855925|244856093 hsa-miR-200a-3p 0 0 1
chr1:244855925|244856093 hsa-miR-432-5p 0 0 1
chr1:244855925|244856093 hsa-miR-432-3p 0 0 1
chr1:244855925|244856093 hsa-miR-765 0 0 1
chr1:244855925|244856093 hsa-miR-892b 0 0 1
chr1:244855925|244856093 hsa-miR-877-5p 0 0 1
chr1:244855925|244856093 hsa-miR-877-3p 0 0 1
chr1:244855925|244856093 hsa-miR-1236-5p 0 0 1
chr1:244855925|244856093 hsa-miR-1236-3p 0 0 1
chr1:244855925|244856093 hsa-miR-548p 0 0 1
chr1:244855925|244856093 hsa-miR-548b-3p 0 0 1
chr1:244855925|244856093 hsa-miR-548c-3p 0 0 1
chr1:244855925|244856093 hsa-miR-24 0 0 1
chr1:244855925|244856093 hsa-miR-608 1 0 0
chr1:244855925|244856093 hsa-miR-663b 1 0 0
chr1:244855925|244856093 hsa-miR-1293 1 0 0
chr1:244855925|244856093 hsa-miR-1265 1 0 0
chr1:244855925|244856093 hsa-miR-1268a 1 0 0
chr1:244855925|244856093 hsa-miR-3125 1 0 0
chr1:244855925|244856093 hsa-miR-4257 1 1 0
chr1:244855925|244856093 hsa-miR-3916 1 0 0
chr1:244855925|244856093 hsa-miR-1268b 1 0 0
chr1:244855925|244856093 hsa-miR-4510 1 0 0
chr1:244855925|244856093 hsa-miR-3978 1 0 0
chr1:244855925|244856093 hsa-miR-4651 1 0 0
chr1:244855925|244856093 hsa-miR-4706 1 0 0
chr1:244855925|244856093 hsa-miR-4739 1 0 0
chr1:244855925|244856093 hsa-miR-5192 1 0 0
chr1:244855925|244856093 hsa-miR-6081 1 0 0
chr1:244855925|244856093 hsa-miR-6127 1 0 0
chr1:244855925|244856093 hsa-miR-6130 1 0 0
chr1:244855925|244856093 hsa-miR-6134 1 1 0
chr1:244855925|244856093 hsa-miR-6863 1 0 0
chr1:244855925|244856093 hsa-miR-12114 1 0 0
chr1:244855925|244856093 hsa-miR-4435 1 0 0
chr1:244855925|244856093 hsa-miR-4433b-3p 1 0 0
chr1:244855925|244856093 hsa-miR-323a-5p 1 0 0
chr1:244855925|244856093 hsa-miR-4433a-3p 1 0 0
chr1:244855925|244856093 hsa-miR-671-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6825-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6799-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6807-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6757-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6880-5p 1 0 0
chr1:244855925|244856093 hsa-miR-7847-3p 0 1 0
chr1:244855925|244856093 hsa-miR-3677-5p 1 0 0
chr1:244855925|244856093 hsa-miR-7154-3p 1 0 0
chr1:244855925|244856093 hsa-miR-6727-5p 1 0 0
chr1:244855925|244856093 hsa-miR-3187-3p 1 1 0
chr1:244855925|244856093 hsa-miR-6732-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6760-5p 0 1 0
chr1:244855925|244856093 hsa-miR-6782-5p 1 0 0
chr1:244855925|244856093 hsa-miR-5008-5p 1 0 0
chr1:244855925|244856093 hsa-miR-4764-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6847-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6824-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6878-5p 0 1 0
chr1:244855925|244856093 hsa-miR-6866-5p 1 0 0
chr1:244855925|244856093 hsa-miR-5004-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6865-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6737-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6756-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6769a-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6815-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6819-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6851-5p 1 0 0
chr1:244855925|244856093 hsa-miR-11181-3p 1 0 0
chr1:244855925|244856093 hsa-miR-328-5p 1 0 0
chr1:244855925|244856093 hsa-miR-4745-5p 1 0 0
chr1:244855925|244856093 hsa-miR-3173-3p 0 1 0
chr1:244855925|244856093 hsa-miR-3679-5p 1 0 0
chr1:244855925|244856093 hsa-miR-541-3p 1 0 0
chr1:244855925|244856093 hsa-miR-6762-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6718-5p 1 0 0
chr1:244855925|244856093 hsa-miR-6859-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:244855925|244856093
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MSQCSVSFLVEEPFCFLPYIAPRVFGLL
Nucleotide Sequence TTGAGCCAGTGTTCTGTTTCTTTTCTGGTGGAAGAGCCTTTTTGCTTTCTTCCTTATATTGCTCCAAGAGTTTTTGGGCTTCTT
CircID chr1:244855925|244856093
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MNPPRPLWPPPLLNWFLPLLFLLLFFEPVFCFFSGGRAFLLSSLYCSKSFWAS
Nucleotide Sequence TTGAATCCTCCACGTCCTCTATGGCCACCACCTCTGTTAAACTGGTTCTTGCCACTCTTATTTTTATTGCTTTTCTTTGAGCCAGTGTTCTGTTTCTTTTCTGGTGGAAGAGCCTTTTTGCTTTCTTCCTTATATTGCTCCAAGAGTTTTTGGGCTTCT
CircID chr1:244855925|244856093
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMR
Nucleotide Sequence TTGGAGCAATATAAGGAAGAAAGCAAAAAGGCTCTTCCACCAGAAAAGAAACAGAACACTGGCTCAAAGAAAAGCAATAAAAATAAGAGTGGCAAGAACCAGTTTAACAGAGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGT
CircID chr1:244855925|244856093
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MAQRKAIKIRVARTSLTEVVAIEDVEDSICV
Nucleotide Sequence CTGGCTCAAAGAAAAGCAATAAAAATAAGAGTGGCAAGAACCAGTTTAACAGAGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab