CircRNA Information

General Information
circRNA Basic Information
CircID chr1:244855946|244856140
Strand -
CircType exon
Host Gene ENSG00000153187.15;
Algorism CIRI2;
Sequence GTCCTCTATGGCCACCACCTCTGTTAAACTGGTTCTTGCCACTCTTATTTTTATTGCTTTTCTTTGAGCCAGTGTTCTGTTTCTTTTCTGGTGGAAGAGCCTTTTTGCTTTCTTCCTTATATTGCTCCAAGAGTTTTTGGGCTTCTTCCTTCTGAAGTTCAACATAGGTTATTTCATCAAAGCACTCAGCTACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:244855946|244856140 hsa-miR-31-5p 0 0 1
chr1:244855946|244856140 hsa-miR-31-3p 0 0 1
chr1:244855946|244856140 hsa-miR-141-5p 0 0 1
chr1:244855946|244856140 hsa-miR-141-3p 0 0 1
chr1:244855946|244856140 hsa-miR-149-5p 0 0 1
chr1:244855946|244856140 hsa-miR-149-3p 0 0 1
chr1:244855946|244856140 hsa-miR-200a-5p 0 0 1
chr1:244855946|244856140 hsa-miR-200a-3p 0 0 1
chr1:244855946|244856140 hsa-miR-432-5p 0 0 1
chr1:244855946|244856140 hsa-miR-432-3p 0 0 1
chr1:244855946|244856140 hsa-miR-520f-5p 0 0 1
chr1:244855946|244856140 hsa-miR-520f-3p 0 0 1
chr1:244855946|244856140 hsa-miR-653-5p 0 0 1
chr1:244855946|244856140 hsa-miR-653-3p 0 0 1
chr1:244855946|244856140 hsa-miR-892b 0 0 1
chr1:244855946|244856140 hsa-miR-877-5p 0 0 1
chr1:244855946|244856140 hsa-miR-877-3p 0 0 1
chr1:244855946|244856140 hsa-miR-1236-5p 0 0 1
chr1:244855946|244856140 hsa-miR-1236-3p 0 0 1
chr1:244855946|244856140 hsa-miR-548p 0 0 1
chr1:244855946|244856140 hsa-miR-1252-5p 0 0 1
chr1:244855946|244856140 hsa-miR-1252-3p 0 0 1
chr1:244855946|244856140 hsa-miR-548b-3p 0 0 1
chr1:244855946|244856140 hsa-miR-548c-3p 0 0 1
chr1:244855946|244856140 hsa-miR-24 0 0 1
chr1:244855946|244856140 hsa-miR-649 0 1 0
chr1:244855946|244856140 hsa-miR-4257 0 1 0
chr1:244855946|244856140 hsa-miR-3978 1 0 0
chr1:244855946|244856140 hsa-miR-5192 1 0 0
chr1:244855946|244856140 hsa-miR-6081 1 0 0
chr1:244855946|244856140 hsa-miR-6134 0 1 0
chr1:244855946|244856140 hsa-miR-4435 1 0 0
chr1:244855946|244856140 hsa-miR-4433b-3p 1 0 0
chr1:244855946|244856140 hsa-miR-4433a-3p 1 0 0
chr1:244855946|244856140 hsa-miR-6807-5p 1 0 0
chr1:244855946|244856140 hsa-miR-3677-5p 1 0 0
chr1:244855946|244856140 hsa-miR-6741-5p 1 0 0
chr1:244855946|244856140 hsa-miR-6727-5p 1 0 0
chr1:244855946|244856140 hsa-miR-3187-3p 0 1 0
chr1:244855946|244856140 hsa-miR-5589-5p 0 1 0
chr1:244855946|244856140 hsa-miR-6760-5p 0 1 0
chr1:244855946|244856140 hsa-miR-6782-5p 1 0 0
chr1:244855946|244856140 hsa-miR-6830-5p 0 1 0
chr1:244855946|244856140 hsa-miR-6878-5p 0 1 0
chr1:244855946|244856140 hsa-miR-6737-5p 1 0 0
chr1:244855946|244856140 hsa-miR-6819-5p 1 0 0
chr1:244855946|244856140 hsa-miR-6851-5p 1 0 0
chr1:244855946|244856140 hsa-miR-328-5p 1 0 0
chr1:244855946|244856140 hsa-miR-3173-3p 0 1 0
chr1:244855946|244856140 hsa-miR-6876-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr1:244855946|244856140
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MSQCSVSFLVEEPFCFLPYIAPRVFGLLPSEVQHRLFHQSTQLP
Nucleotide Sequence TTGAGCCAGTGTTCTGTTTCTTTTCTGGTGGAAGAGCCTTTTTGCTTTCTTCCTTATATTGCTCCAAGAGTTTTTGGGCTTCTTCCTTCTGAAGTTCAACATAGGTTATTTCATCAAAGCACTCAGCTACCT
CircID chr1:244855946|244856140
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MFLFWWKSLFAFFLILLQEFLGFFLLKFNIGYFIKALSY
Nucleotide Sequence CTGTTTCTTTTCTGGTGGAAGAGCCTTTTTGCTTTCTTCCTTATATTGCTCCAAGAGTTTTTGGGCTTCTTCCTTCTGAAGTTCAACATAGGTTATTTCATCAAAGCACTCAGCTAC
CircID chr1:244855946|244856140
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MLNWFLPLLFLLLFFEPVFCFFSGGRAFLLSSLYCSKSFWASSF
Nucleotide Sequence CTGTTAAACTGGTTCTTGCCACTCTTATTTTTATTGCTTTTCTTTGAGCCAGTGTTCTGTTTCTTTTCTGGTGGAAGAGCCTTTTTGCTTTCTTCCTTATATTGCTCCAAGAGTTTTTGGGCTTCTTCCTTCTGA
CircID chr1:244855946|244856140
ORF Type ORF4
Protein Length 55
Nucleotide Length 165
Protein Sequence MLNFRRKKPKNSWSNIRKKAKRLFHQKRNRTLAQRKAIKIRVARTSLTEVVAIED
Nucleotide Sequence ATGTTGAACTTCAGAAGGAAGAAGCCCAAAAACTCTTGGAGCAATATAAGGAAGAAAGCAAAAAGGCTCTTCCACCAGAAAAGAAACAGAACACTGGCTCAAAGAAAAGCAATAAAAATAAGAGTGGCAAGAACCAGTTTAACAGAGGTGGTGGCCATAGAGGAC
CircID chr1:244855946|244856140
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRG
Nucleotide Sequence TTGGAGCAATATAAGGAAGAAAGCAAAAAGGCTCTTCCACCAGAAAAGAAACAGAACACTGGCTCAAAGAAAAGCAATAAAAATAAGAGTGGCAAGAACCAGTTTAACAGAGGTGGTGGCCATAGAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab