CircRNA Information

General Information
circRNA Basic Information
CircID chr1:245002121|245017326
Strand +
CircType exon
Host Gene ENSG00000203666.12;
Algorism find_circ;CIRI2;DCC;
Sequence GGCCTGGGATACAACAGTGATGAGATAAGGCCTCGGACTTTACTGATCGAACATCTAATGGAAGGTGGAAGAAGAGACCATCACACAATGACGGTGTTATGGGGAACACAGGGTACAGTGCATTCATACCTCCTCCCCATCACTGTGTCAATCGCTTAACCATCTCTCTGCCTCCAGCCTTGCTTCCTTCCAGCTACGACTCTACCCAAAGGACTTGAGATAGAGAGGCCGCTGCTGGAAATATTCTGTCACCGTGATTGGAGTGGTTGAGTGGTTCCATGAGTATATGCAGATAATAGTAGCAGAATTTCACAAAAAAATCAAAGAGGCATTTGAAGTCTTTGACCATGAGTCGAATAATACAGTGGATGTGAG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr1:245002121|245017326 hsa-miR-377-5p 0 0 1
chr1:245002121|245017326 hsa-miR-377-3p 0 0 1
chr1:245002121|245017326 hsa-miR-573 0 0 1
chr1:245002121|245017326 hsa-miR-583 0 0 1
chr1:245002121|245017326 hsa-miR-591 0 0 1
chr1:245002121|245017326 hsa-miR-633 0 0 1
chr1:245002121|245017326 hsa-miR-661 1 0 1
chr1:245002121|245017326 hsa-miR-655-5p 0 0 1
chr1:245002121|245017326 hsa-miR-655-3p 0 0 1
chr1:245002121|245017326 hsa-miR-1264 0 0 1
chr1:245002121|245017326 hsa-miR-513b-5p 0 0 1
chr1:245002121|245017326 hsa-miR-513b-3p 0 0 1
chr1:245002121|245017326 hsa-miR-369-5p 0 0 1
chr1:245002121|245017326 hsa-miR-548c-3p 0 0 1
chr1:245002121|245017326 hsa-miR-369-3p 0 0 1
chr1:245002121|245017326 hsa-miR-7 0 0 1
chr1:245002121|245017326 hsa-miR-768-3p 0 0 1
chr1:245002121|245017326 hsa-miR-638 1 0 0
chr1:245002121|245017326 hsa-miR-1261 1 0 0
chr1:245002121|245017326 hsa-miR-2110 0 1 0
chr1:245002121|245017326 hsa-miR-3917 0 1 0
chr1:245002121|245017326 hsa-miR-4779 1 0 0
chr1:245002121|245017326 hsa-miR-6088 1 0 0
chr1:245002121|245017326 hsa-miR-6165 1 0 0
chr1:245002121|245017326 hsa-miR-6745 0 1 0
chr1:245002121|245017326 hsa-miR-12114 0 1 0
chr1:245002121|245017326 hsa-miR-12136 0 1 0
chr1:245002121|245017326 hsa-miR-510-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6833-5p 1 0 0
chr1:245002121|245017326 hsa-miR-4786-5p 0 1 0
chr1:245002121|245017326 hsa-miR-6515-5p 1 1 0
chr1:245002121|245017326 hsa-miR-6880-5p 1 1 0
chr1:245002121|245017326 hsa-miR-4695-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6746-5p 1 0 0
chr1:245002121|245017326 hsa-miR-4722-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6890-5p 1 0 0
chr1:245002121|245017326 hsa-miR-4655-5p 1 0 0
chr1:245002121|245017326 hsa-miR-1292-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6796-5p 1 0 0
chr1:245002121|245017326 hsa-miR-3190-3p 0 1 0
chr1:245002121|245017326 hsa-miR-1224-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6888-5p 1 1 0
chr1:245002121|245017326 hsa-miR-6810-5p 1 0 0
chr1:245002121|245017326 hsa-miR-4713-3p 1 0 0
chr1:245002121|245017326 hsa-miR-5197-3p 0 1 0
chr1:245002121|245017326 hsa-miR-3144-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6769b-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6870-5p 1 0 0
chr1:245002121|245017326 hsa-miR-1343-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6752-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6851-5p 1 1 0
chr1:245002121|245017326 hsa-miR-7110-5p 1 0 0
chr1:245002121|245017326 hsa-miR-1249-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6763-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6780b-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6794-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6795-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6887-5p 1 0 0
chr1:245002121|245017326 hsa-miR-4723-5p 1 0 0
chr1:245002121|245017326 hsa-miR-939-5p 1 0 0
chr1:245002121|245017326 hsa-miR-4665-5p 1 0 0
chr1:245002121|245017326 hsa-miR-6891-5p 1 0 0
chr1:245002121|245017326 hsa-miR-4716-3p 1 0 0
chr1:245002121|245017326 hsa-miR-769-3p 1 0 0
chr1:245002121|245017326 hsa-miR-619-5p 1 1 0
chr1:245002121|245017326 hsa-miR-6506-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr1:245002121|245017326
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MVKDFKCLFDFFVKFCYYYLHILMEPLNHSNHGDRIFPAAASLSQVLWVES*
Nucleotide Sequence ATGGTCAAAGACTTCAAATGCCTCTTTGATTTTTTTGTGAAATTCTGCTACTATTATCTGCATATACTCATGGAACCACTCAACCACTCCAATCACGGTGACAGAATATTTCCAGCAGCGGCCTCTCTATCTCAAGTCCTTTGGGTAGAGTCGTAG
CircID chr1:245002121|245017326
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MNALYPVFPITPSLCDGLFFHLPLDVRSVKSEALSHHCCIPG
Nucleotide Sequence ATGAATGCACTGTACCCTGTGTTCCCCATAACACCGTCATTGTGTGATGGTCTCTTCTTCCACCTTCCATTAGATGTTCGATCAGTAAAGTCCGAGGCCTTATCTCATCACTGTTGTATCCCAGGC
CircID chr1:245002121|245017326
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MGNTGYSAFIPPPHHCVNRLTISLPPALLPSSYDSTQRT*
Nucleotide Sequence ATGGGGAACACAGGGTACAGTGCATTCATACCTCCTCCCCATCACTGTGTCAATCGCTTAACCATCTCTCTGCCTCCAGCCTTGCTTCCTTCCAGCTACGACTCTACCCAAAGGACTTGA
CircID chr1:245002121|245017326
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MEGGRRDHHTMTVLWGTQGTVHSYLLPITVSIA*
Nucleotide Sequence ATGGAAGGTGGAAGAAGAGACCATCACACAATGACGGTGTTATGGGGAACACAGGGTACAGTGCATTCATACCTCCTCCCCATCACTGTGTCAATCGCTTAA
CircID chr1:245002121|245017326
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MLLLSPVFPITPSLCDGLFFHLPLDVRSVKSEALSHHCCIPG
Nucleotide Sequence CTGCTACTATTATCTCCTGTGTTCCCCATAACACCGTCATTGTGTGATGGTCTCTTCTTCCACCTTCCATTAGATGTTCGATCAGTAAAGTCCGAGGCCTTATCTCATCACTGTTGTATCCCAGGC
CircID chr1:245002121|245017326
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MGYNSDEIRPRTLLIEHLMEGGRRDHHTMTVLWGTQEIIVAEFHKKIKEAFEVFDHESNNTVDV
Nucleotide Sequence CTGGGATACAACAGTGATGAGATAAGGCCTCGGACTTTACTGATCGAACATCTAATGGAAGGTGGAAGAAGAGACCATCACACAATGACGGTGTTATGGGGAACACAGGAGATAATAGTAGCAGAATTTCACAAAAAAATCAAAGAGGCATTTGAAGTCTTTGACCATGAGTCGAATAATACAGTGGATGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr1:245002121|245017326 U2AF2 3 3 0
chr1:245002121|245017326 FUS 0 1 0
chr1:245002121|245017326 TBRG4 0 1 0
chr1:245002121|245017326 TAF15 0 1 0
chr1:245002121|245017326 NUDT21 1 0 0
chr1:245002121|245017326 CPSF3 0 1 0
chr1:245002121|245017326 ELAVL1 2 1 0
chr1:245002121|245017326 DGCR8 1 0 0
chr1:245002121|245017326 NOP58 0 0 1
chr1:245002121|245017326 KHSRP 0 1 0
chr1:245002121|245017326 EIF3G 0 1 0
chr1:245002121|245017326 SF3A3 1 0 0
chr1:245002121|245017326 FIP1L1 1 2 1
chr1:245002121|245017326 PTBP1 0 3 0
chr1:245002121|245017326 HNRNPC 3 0 0
chr1:245002121|245017326 LIN28B 0 0 3
chr1:245002121|245017326 IGF2BP2 2 4 3
chr1:245002121|245017326 TARDBP 1 1 0
chr1:245002121|245017326 CSTF2 1 0 0
chr1:245002121|245017326 RBM22 0 1 0
chr1:245002121|245017326 TIAL1 0 2 0
chr1:245002121|245017326 EIF4A3 1 2 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab